Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq7240 150 1e-31 seq22597 140 2e-28 seq22615 129 4e-25 seq6888 91.5 1e-13 seq118 87.8 1e-12 seq6982 82.4 5e-11 >seq7240 Length=45712 Score = 150 bits (166), Expect = 1e-31 Identities = 172/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | |||||||| ||||| |||| || ||||| ||||| ||||| || Sbjct 7302 CCTCCCCTCAAGCGCAGGACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 7243 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | ||| |||| ||||| |||||||| || ||||||| || ||||||||| | || Sbjct 7242 AGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGA 7183 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || || ||||| | ||||| ||||| || || || | ||| ||| ||| | Sbjct 7182 ATGCCTTCTTTGTCTTGAATTTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCCA 7125 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| ||| ||||| || || || | ||| || |||||||||||||| Sbjct 7124 CTTCAAGGGTGATGGTTTTACCGGTCAAGGTTTTCACAAAGATCTGCAT 7076 Score = 141 bits (156), Expect = 6e-29 Identities = 161/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | |||| || ||||| ||||| ||||| || | | | ||| |||| Sbjct 6215 AGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTTCGCCCATCT 6156 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||||||||| ||||||| || ||||||||| | || | || |||||||| Sbjct 6155 TCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 6096 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| ||||| || || || | ||| ||| ||| || |||| ||| |||| Sbjct 6095 TGAATTTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGG 6038 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || | |||||| |||||||||||||| Sbjct 6037 TCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 6004 >seq22597 Length=1249212 Score = 140 bits (154), Expect = 2e-28 Identities = 161/215 (75%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||||||||| |||| |||| || ||||| ||||| ||||| || ||| | || |||| Sbjct 1181764 CAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATC 1181705 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || ||||| || | |||||||| | || | ||||| ||||| Sbjct 1181704 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTGTC 1181645 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | ||||| |||||| || || || | ||| ||| ||| || || | ||| ||| Sbjct 1181644 TTGGATTTTGGCTTTGAC--ATTCTCAATAGTATCACTGGGCTCCACTTCCAGGGTGATG 1181587 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| |||||||| |||||||||||||| Sbjct 1181586 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1181552 Score = 134 bits (148), Expect = 9e-27 Identities = 160/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||||||||| |||| |||| || ||||| ||||| ||||| || ||| | || |||| Sbjct 1182817 CAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATC 1182758 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || ||||| || | |||||||| | || | || || ||||| Sbjct 1182757 TTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTC 1182698 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | ||||| |||||| || || || | ||| ||| ||| || || | ||| ||| Sbjct 1182697 TTGGATTTTGGCTTTGAC--ATTCTCAATAGTATCACTGGGCTCCACTTCTAGGGTGATG 1182640 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| |||||||| |||||||||||||| Sbjct 1182639 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1182605 Score = 125 bits (138), Expect = 5e-24 Identities = 158/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||||||||| |||| |||| || ||||| ||||| ||||| || ||| | || | || Sbjct 1181536 CAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCGTC 1181477 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || ||||| || | |||||||| | || | ||||| ||||| Sbjct 1181476 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTGTC 1181417 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | ||||| |||||| || || || | ||| ||| ||| || || | ||| ||| Sbjct 1181416 TTGGATTTTGGTTTTGAC--ATTCTCAATAGTATCACTGGGCTCCACCTCCAGGGTGATG 1181359 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || ||||| || |||||||||||||| Sbjct 1181358 GTCTTCCCTGTCAGGGTTTTCACAAAGATCTGCAT 1181324 Score = 89.7 bits (98), Expect = 3e-13 Identities = 115/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || ||||| ||||| || || ||||| || | |||||||| | || | ||||| ||| Sbjct 1181934 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTG 1181875 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTA 34940 || | ||||| |||||| || || || | ||| ||| ||| || || | ||| | Sbjct 1181874 TCTTGGATTTTGGCTTTGAC--ATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTGA 1181817 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || || |||||||| |||||||||||||| Sbjct 1181816 TGGTTTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1181780 >seq22615 Length=203576 Score = 129 bits (142), Expect = 4e-25 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | |||| |||||||| ||||| ||||| || ||| | ||| |||| Sbjct 193081 AGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCT 193022 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| |||||||| || ||||||| || ||||| ||| | || | || || || || Sbjct 193021 TCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATGCCTTCTTTATCC 192962 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || ||| ||||| || || || | ||| ||| ||| || |||| ||| |||| Sbjct 192961 TGGATCTTTGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGG 192904 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || || || | |||||| |||||||||||||| Sbjct 192903 TTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 192870 >seq6888 Length=4066119 Score = 91.5 bits (100), Expect = 1e-13 Identities = 166/240 (69%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | |||||| | ||| | |||| || ||||| ||| | ||||| || Sbjct 2510358 CCTCCCCTCAAGCACAGGACTAAGTGCAGGGTGGATTCTTTCTGGATGCTGTAGTCAGAC 2510417 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCT-TGCGG 34869 ||| | | | || | |||||||||||||| || || || | || ||| | ||| | || Sbjct 2510418 AGGGTACACCCACCTTCCAGTTGCTTTCCAGCAAAAATTAATCTCTGCCGCTCTGAGGGG 2510477 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCG 34927 | || || || || | || || ||||| || || || | ||| ||| || Sbjct 2510478 GATGCCTTCTTTATCCTGGATCTTCACCTTGAC--ATTCTCAATGGTATCACTGGGCTTC 2510535 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATAGTGGAC 34987 || ||| ||| |||||||| || || | ||||| ||||||| ||||| ||| || || Sbjct 2510536 ACTCCAAGGGTGATGGTCTTACCAGTCAAAGTCTTCACAAAGAAATGCATTATATTGAAC 2510595 >seq118 Length=1243895 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | |||||| | ||||| ||| || ||||| ||||| ||||| || Sbjct 315079 CCTCCCCTCAAGCACAGGACTAAGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 315020 Query 34811 AGGCTGCGCTCATCGTCCAGTT--GCTTTCCGGCGAAGATCAGTCGTTGCTGGTCT-TGC 34867 ||| | || || | ||||||| ||||||| || || || | || ||||| ||| | Sbjct 315019 AGGGTATGCCCACCTTCCAGTTGGGCTTTCCAGCAAAAATTAATCTCTGCTGCTCTGGGG 314960 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCT 34925 || | | || || || | || || ||||| || || || | ||| ||| || Sbjct 314959 GGGATGCTTTCTTTATCCTGGATCTTCACCTTGAC--ATTCTCAATGGTGTCACTGGGCT 314902 Query 34926 CGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||| ||| |||||||| || || | |||||| ||||||| ||||| Sbjct 314901 TCACTTCAAGGGTCATGGTCTTACCAGTCA-GGTCTTCACAAAGAAATGCAT 314851 >seq6982 Length=3457922 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/190 (71%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || ||||| ||||| ||||| || ||| | | | |||| ||||| || ||||| || | Sbjct 878039 TCTTTCTGGATGTTGTAGTCAGACAGGGTACACCCATCTTCCAGCTGGTTTCCAGC--AC 878096 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || ||||||||| | || | || || || || | ||||| ||||| || Sbjct 878097 ATCAATCTCTGCTGGTCTAGGGGAATGCCTTCTTTATCTTGAATTTTGGCCTTGAC--AT 878154 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || | ||| ||| || || |||| ||| ||||| || || || | ||| || | Sbjct 878155 TCTCAATGGTATCACTGGGTTCCACTTCAAGGGTGATGGTTTTACCGGTCAAGGTTTTCA 878214 Query 34965 CAAAGATCTG 34974 |||||||||| Sbjct 878215 CAAAGATCTG 878224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325550005487906