Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq7240 170 1e-37 seq22597 134 1e-26 seq7502 114 1e-20 seq6982 111 1e-19 seq22615 104 2e-17 seq118 87.8 1e-12 seq6888 82.4 6e-11 >seq7240 Length=45712 Score = 170 bits (188), Expect = 1e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| ||||| ||||| ||||| ||||||||||| || ||||| || || | Sbjct 7302 CCTCCCCTCAAGCGCAGGACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 7243 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || || || |||||| | |||||||| ||||| || || ||| Sbjct 7242 AGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGA 7183 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||||||||| |||||| | |||||| | || | |||||| | || || Sbjct 7182 ATGCCTTCTTTGTCTTG-AATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 7124 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||| || || ||||| || || |||||||| ||||| |||||||| Sbjct 7123 TTCAAGGGTGATGGTTTTACCGGTCAAGGTTTTCACAAAGATCTGCAT 7076 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || | ||| || ||||| || || ||||||||||| || ||||| || || | Sbjct 6230 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 6171 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || || || || ||| | |||||||| ||||| || || ||| Sbjct 6170 AAGGTTCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGA 6111 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || ||||| || |||||| | |||||| | || | |||||| | || || Sbjct 6110 ATGCCTTCCTTGTCCTG-AATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 6052 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||| || || || |||||||| ||||| || ||||| ||||||||| Sbjct 6051 TTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATT 6003 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || | ||| || ||||| || || || ||||| || || ||||| || || | Sbjct 6458 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 6399 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| ||| || || || || |||||| | || ||||| |||||||| || || Sbjct 6398 AGGGTGCGACCATCTTCCAGCTGCTTTCCAGCAAAAATTAATCTCTGCTGATCTGGGGGG 6339 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||| || || | ||| |||||| | || | |||||| | |||||| Sbjct 6338 ATGCCTTCTTTATCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 6279 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || ||||| || ||||| || || || |||||||| Sbjct 6278 TCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCAT 6232 >seq22597 Length=1249212 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || | |||||| |||| |||||| ||||||||||| || ||||| || || | Sbjct 1181778 CCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1181719 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| ||| ||| || || || ||||| ||| | || | || ||||| || || || Sbjct 1181718 AGGGTACGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 1181659 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | ||| ||||||| | || | ||| ||| | || ||| Sbjct 1181658 ATGCCCTCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCACT 1181599 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | ||| || ||||| |||||||| Sbjct 1181598 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1181552 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || | |||||| |||| |||||| ||||||||||| || ||||| || || | Sbjct 1182831 CCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1182772 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| ||| ||| || || || ||||| ||| | || | || ||||| || || || Sbjct 1182771 AGGGTACGACCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGG 1182712 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | ||| ||||||| | || | ||| ||| | || ||| Sbjct 1182711 ATGCCTTCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCACT 1182652 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | ||| || ||||| |||||||| Sbjct 1182651 TCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1182605 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || | |||||| |||| |||||| ||||||||||| || ||||| || || | Sbjct 1181550 CCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1181491 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| ||| || || || || ||||| ||| | || | || ||||| || || || Sbjct 1181490 AGGGTACGACCGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 1181431 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | ||| ||||||| | || | ||| ||| | || || Sbjct 1181430 ATGCCCTCTTTGTCTTGGATTTTGGTTTTGACATTCTCAATAGTATCACTGGGCTCCACC 1181371 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || || || || || | |||||| ||||| ||||||||| Sbjct 1181370 TCCAGGGTGATGGTCTTCCCTGTCAGGGTTTTCACAAAGATCTGCATT 1181323 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||| ||| | || | || ||||| || || || || ||||||||| Sbjct 1181934 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTG 1181875 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | ||| ||||||| | || | ||||||| | || || || || || || Sbjct 1181874 TCTTGGATTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTGATG 1181815 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || | ||| || ||||| |||||||| Sbjct 1181814 GTTTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1181780 >seq7502 Length=209603 Score = 114 bits (126), Expect = 1e-20 Identities = 160/220 (73%), Gaps = 7/220 (3%) Strand=Plus/Minus Query 29565 CCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGT 29624 |||||||| ||| ||||| | || |||| |||||| || ||||| || || | ||| Sbjct 174994 CCTCAAACCCAGAACCAAGTACAGGGTGGGTTCTTTCTGGATGTTGTAGTCAG----GGT 174939 Query 29625 GCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACC 29684 || | || || | || || | |||| | || | ||| |||| ||| || ||||| || Sbjct 174938 GCCACCATGTTCCAACTGCTTTCTAGCAAAGATTA-TCTCTGCTCATCTGGAGGAATGCC 174880 Query 29685 CTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAA 29743 ||||||||||| ||||| || |||||| | || | |||||| | ||| |||||| Sbjct 174879 TTCTTTGTCTTG-CATTTTGGTCTTGACATTCTCAAGGGTGTCACTGGGCTCTGCTTCAA 174821 Query 29744 GAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||| || ||||| ||||| || |||| ||||| ||||| Sbjct 174820 GAGTGATGGTTTTACCAGTCAAAATTTTCACAAAGATCTG 174781 >seq6982 Length=3457922 Score = 111 bits (122), Expect = 1e-19 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 29586 AAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTT 29645 ||| ||||||||||| || ||||| || || | | ||| | ||| || || || || Sbjct 878029 AAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACACCCATCTTCCAGCTGGTT 878088 Query 29646 GCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG 29705 ||||| | |||||||| ||||| || | ||||| || ||||| ||||| |||||| | Sbjct 878089 TCCAGC--ACATCAATCTCTGCTGGTCTAGGGGAATGCCTTCTTTATCTTG-AATTTTGG 878145 Query 29706 -TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTA 29764 |||||| | || | || ||| |||| |||||||| || || ||||| || || | Sbjct 878146 CCTTGACATTCTCAATGGTATCACTGGGTTCCACTTCAAGGGTGATGGTTTTACCGGTCA 878205 Query 29765 AGGTTTTAACAAATATCTG 29783 ||||||| ||||| ||||| Sbjct 878206 AGGTTTTCACAAAGATCTG 878224 >seq22615 Length=203576 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || | ||| || || || ||||| || |||||||| || ||||| || || | Sbjct 192868 CCACCTCTGAGACGAAGGACTAAGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCAGAC 192809 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| ||| || || || || || ||| | |||||||| ||||| || || || Sbjct 192808 AGGGTGCGACCATCTTCCAGCTGCTTTCCGGCAAAAATCAATCTCTGCTGGTCTGGGGGG 192749 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||| || || | ||| |||||| |||| | || ||| |||||||| Sbjct 192748 ATGCCTTCTTTATCCTGGATCTTTGCCTTGACATTTTCAATGGTATCACTGGGTTCTACT 192689 Query 29740 TCAAGAGTTATA 29751 ||||| || ||| Sbjct 192688 TCAAGGGTGATA 192677 >seq118 Length=1243895 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| | ||| || || ||||| ||||||||||| || ||||| || || | Sbjct 315079 CCTCCCCTCAAGCACAGGACTAAGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 315020 Query 29620 ATGGTGCGAGAATCATCGAGTT--GTTTGCCAGCATATATCAATCTTTGCTGATC-CGGC 29676 | ||| | | | || |||| | || |||||| | || ||||| ||||| || || Sbjct 315019 AGGGTATGCCCACCTTCCAGTTGGGCTTTCCAGCAAAAATTAATCTCTGCTGCTCTGGGG 314960 Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 || || | ||||| || || | || |||||| | || | |||||| | | Sbjct 314959 GGGATGCTTTCTTTATCCTGGATCTTCACCTTGACATTCTCAATGGTGTCACTGGGCTTC 314900 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTA 29790 |||||||| || || || || |||| | |||| || ||||| | |||||| || Sbjct 314899 ACTTCAAGGGTCATGGTCTTACCAG-TCAGGTCTTCACAAAGAAATGCATTGTA 314847 >seq6888 Length=4066119 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/232 (68%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| | ||| || || || || ||||||||||| || ||| | || || | Sbjct 2510358 CCTCCCCTCAAGCACAGGACTAAGTGCAGGGTGGATTCTTTCTGGATGCTGTAGTCAGAC 2510417 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCG-GCGG 29678 | ||| | | | || ||||| || |||||| | || ||||| ||| | || | | || Sbjct 2510418 AGGGTACACCCACCTTCCAGTTGCTTTCCAGCAAAAATTAATCTCTGCCGCTCTGAGGGG 2510477 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||| || || | || |||||| | || | || ||| | | || Sbjct 2510478 GATGCCTTCTTTATCCTGGATCTTCACCTTGACATTCTCAATGGTATCACTGGGCTTCAC 2510537 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTA 29790 | |||| || || || || ||||| || || || ||||| | |||||| || Sbjct 2510538 TCCAAGGGTGATGGTCTTACCAGTCAAAGTCTTCACAAAGAAATGCATTATA 2510589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385050307142334