Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq22463 273 2e-67 seq22518 176 3e-38 seq80 131 1e-24 seq15244 116 3e-20 seq22416 105 5e-17 seq229 96.9 3e-14 seq227 93.3 3e-13 >seq22463 Length=748140 Score = 273 bits (302), Expect = 2e-67 Identities = 946/1461 (65%), Gaps = 20/1461 (1%) Strand=Plus/Plus Query 281377 ATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATT 281436 || |||||| || || || || |||| |||| ||| ||||| || || ||||| Sbjct 308025 ATCATTAGTGATGGTGATCTTGTTGGCTTTGCCTGTGCTCTTATCCATAGCGGTGACATT 308084 Query 281437 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 281496 ||||| ||||||||||| | |||||| || || ||||| || ||||| || | |||| Sbjct 308085 CAGAATTCCATTGGCATCAATATCAAAGGTTACCTCAATCTGGGGGACACCACGGGGAGC 308144 Query 281497 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 281556 ||| || || || || | ||| ||||| || || || || || | || Sbjct 308145 AGGAGGAATGCCACTCAGGTCAAAACGGCCCAGCAGGTTGTTGTCCTTGGTCATGGCCCG 308204 Query 281557 TTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATA 281615 ||| ||||| | | ||||| ||| || | | || || || ||||| || ||||| | Sbjct 308205 TTCTCCCTCATATACCTGGATCAGT-ACACCCGGCTGGTTGTCAGAATAGGTGGTAAAGA 308263 Query 281616 CTCTGGAT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCA 281674 ||||| | | ||| || || || | ||| | | || | ||||| | ||| Sbjct 308264 -TCTGGGTCTGTTTGGTGGGGATGGTGGAGTTGCGTTTGATCAGTGCTGTCATCACACCT 308322 Query 281675 CCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGT 281734 || ||||| || | || || ||||| |||| ||||| | || | | | || | | Sbjct 308323 CCTGCTGTCTCCAGCCCCAGGGAAAGGGGAGCCACATCCAACAGCAACAGGTCCTGCACT 308382 Query 281735 TTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGC 281793 || || | | || | ||| | ||||| ||||| || | || || ||||| || ||||| Sbjct 308383 TTCTC-TGATTTATCACCCATCAGAATGGCTGCCTGCACTGCTGCTCCATAGGCTACAGC 308441 Query 281794 TTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTG 281853 |||||||| || | | | | || || | | | |||||||| |||| ||||||| Sbjct 308442 CTCATCAGGGTTGATACTCTTGTTCAGGTCTCTGCCATTGAAGAAATCCTGCAGAAGTT- 308500 Query 281854 TCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATT 281912 ||| ||| || || || || | || || || || | || | || | | | | || Sbjct 308501 TCTGTACTTTGGGGATTCGGGTGGAGCCACCCACAAGGACGACGTCGTTAATTTTGGCTT 308560 Query 281913 TATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGT 281972 | |||| || | ||| | |||| || ||||| || || | | | |||| | Sbjct 308561 TGTCCATCTTGGCATCTCGCAGGGCTTTCTCTACGGGCTCCAGGGTACCCCGGAACAGAT 308620 Query 281973 CTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGA 282032 | || || || ||||| || | || ||||| | || || | | ||||| ||||| | Sbjct 308621 CCGAGCACAGCTCTTCAAACCTTGCCCTAGTGACAGAAGTATAAAAGTCAATGCCTTCAA 308680 Query 282033 ACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTT 282092 |||| || |||| ||||| | | ||| || ||||| || | | ||||| | || Sbjct 308681 ACAAGGAGTCAATTTCAAGATTGGCTTGGGTGCTGGAAGACAGGGTTCTCTTAGCTCTTT 308740 Query 282093 CACATGCTGTCCTTAGTCTTCGTA----AGGCTTTTGCTGATTGATTCAAATCTGTTTTA 282148 |||| ||||| | ||||||| | | |||| | ||| | || |||| | ||| Sbjct 308741 CACAGGCTGTTCGAAGTCTTCTCACAGCACGCTTGTTCTGGCTAAT----ATCTTTCTTA 308796 Query 282149 TATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCT 282208 | ||||| |||||| || |||||| | |||| || ||||||||||| || || || Sbjct 308797 TGTTTTCGCTTGAATTCCTCAACAAAGTGGTTTACTAGTCGATTATCAAAGTCCTCCCCA 308856 Query 282209 CCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAA 282268 |||| | || | ||||| || | | | || | |||| || || |||| | | Sbjct 308857 CCCAGGTGGGTGTCTCCTGCAGTGGATTTCACCTCAAAAATCCCGTCATCAATGGTAAGG 308916 Query 282269 AGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TC-ATTTCTTTGT 282326 | | |||||| || || ||||||| |||||| || || |||| || | || || Sbjct 308917 ATGGAGACATCAAAAGTGCCCCCACCCAGATCAAAGATCAGCACATGTCTCTCTCCCTGA 308976 Query 282327 CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCA 282386 || | |||||| || ||||| |||| ||||| || || |||||||| || || |||| Sbjct 308977 CTAG--CTTTATCTAGTCCATAGGCAATGGCAGCTGCTGTCGGTTCATTGATGATCCTCA 309034 Query 282387 AAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAA 282446 || || || ||||| || ||| ||||| || ||||| || | ||| || || || | Sbjct 309035 GCACGTTCAGGCCAGCGATCACTCCAGCATCCTTGGTGGCCTGGCGTTGAGAGTCATTGA 309094 Query 282447 AATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTG 282506 |||| || || ||||| || || |||| || || | | || | || || || | Sbjct 309095 AATAGGCCGGGACAGTGATGACTGCATTGGTGACCGCATGACCCAAGTAGGCCTCAGCAG 309154 Query 282507 TTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATT 282566 | | |||||||| | || | ||| || || || | ||| ||| | | |||| || Sbjct 309155 TCTCCTTCATTTTGGTCAACACCATGGAGGAGATCTCTTCAGGATAGAAGGCCTTGTTTT 309214 Query 282567 CATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCC 282626 | || || || |||| || | || ||| ||| | || || || | || |||| Sbjct 309215 CCCCTTTGTAGGACACTTGAACTTTAGGCTTACCCCCATCGTTTATCACCTGGAAGGGCC 309274 Query 282627 AATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 282686 | | ||||| || || || || || ||| | | || || | | ||| | Sbjct 309275 AGTGCTTCATGTCCGACTGGACCACCGAATCTCCAAATTTACGGCCGATCAGCCTTTTGG 309334 Query 282687 CATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCA 282746 | ||||| | || || ||||| | || | || | |||||||||||||||||| | Sbjct 309335 CGTCAAAGACTGTGTTCTGAGGATTCATGGCCACCTGGTTTTTGGCTGCATCTCCAATGA 309394 Query 282747 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 282806 | ||||| ||||| || | ||||| || || || || || || || ||||| | Sbjct 309395 GTCTCTCTGTGTCTGTGAAGGCCACATAGCTGGGGGTGGTTCGGTTGCCCTGGTCATTGG 309454 Query 282807 CAATAATTTCAACTTTACCAT 282827 | || || || || || |||| Sbjct 309455 CGATGATCTCCACCTTGCCAT 309475 >seq22518 Length=3477175 Score = 176 bits (194), Expect = 3e-38 Identities = 372/547 (68%), Gaps = 10/547 (2%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| | ||||||||||||| ||||| || ||| | ||| Sbjct 1976087 TTTTTGTCCAAGCCATAAGCAATACCAGCAGCAGTTGGCTCATTGATGATTTGGAGCACA 1976028 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| ||||| || ||| ||||| || ||||| Sbjct 1976027 TTGAGACCAGCAATGGTTCCAGCATCTTTTGTGGCCTGATGTTGGGAATCATTGAAATAG 1975968 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || | | || | || |||| ||| || ||| | || |||| | ||| | Sbjct 1975967 GCTGATCCTGTGACCACAGCATTTGTGACAGTTTTCCAAAGGTAAGTTTCACCAATTTCT 1975908 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGA-ATATTGCTTGGATTCATT 282570 |||||||| |||| | ||| || || | || || ||| | | | | |||| || | Sbjct 1975907 TTCATTTTGGTTAAGACCATGGAAGATACTTCTTTAGGATAGAAACTTTTTGGTATCCTC 1975848 Query 282571 TTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATA 282630 || ||| |||| | | || | ||| | ||| |||| ||||||| Sbjct 1975847 TTTGTATTCCACTTGGACCTTAGGCCTGCCTGTGTTATTCACCACTGTAAAAGGCCAATG 1975788 Query 282631 TTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCT-ACCAATTAATCGTTTTGCAT 282689 ||||| ||||| || ||| || |||| ||| ||| | |||||| | ||||| |||| Sbjct 1975787 CTTCATGTCTGACTGTACAACTTCATCATCAAA-TCTTTGACCAATCAGACGTTTGGCAT 1975729 Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 ||||||| || |||||| |||| || |||||| ||| || ||||| ||||| | Sbjct 1975728 CAAAAATTGTGTTGGTTC-ATTA----CAACTTGATTTTTTGCAGCATCACCAATTAATC 1975674 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGA-TTACCTTGATCATTCGCA 282808 |||||| || | || | |||||| | ||| | ||| | || ||||||||||| ||| Sbjct 1975673 ATTCTGTGTCAATGAAGGCAACATA-GCTGGGGGTGTTCCTGTTTCCTTGATCATTAGCA 1975615 Query 282809 ATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCA 282868 || || | ||||| |||| ||| | || || ||| | | |||| || || | |||| Sbjct 1975614 ATGATCTTCACTTTCCCATATTGGAAGACTCCCACAAAGGAATAAGTGGTGCCAAGATCA 1975555 Query 282869 ATACCAA 282875 || |||| Sbjct 1975554 ATGCCAA 1975548 >seq80 Length=1128347 Score = 131 bits (144), Expect = 1e-24 Identities = 342/514 (67%), Gaps = 6/514 (1%) Strand=Plus/Minus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 ||||| | |||| ||||| || || ||||| ||||| | |||||||| |||||||| Sbjct 270384 TTATCCACAGCAGAAACATTTAGGATGCCATTTGCATCAATGTCAAATGTTACTTCAATC 270325 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 ||||| || ||||| | || || ||||| ||| | | ||| | || || || Sbjct 270324 TGAGGAACACCTCTGGGTGCTGGGGGGATTCCTGTGAGCTCAAACTTGCCAAGCAGGTTG 270265 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 ||||| || || | | || ||||| || ||| || ||| || ||| || || Sbjct 270264 TTATCCTTTGTCATTGCTCTCTCACCTTCATAAACCTGAATAAGCACACCAGGCTGGTTG 270205 Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 281656 || ||||| || ||||| |||| | || ||| | || || || | | || Sbjct 270204 TCAGAATAGGTGGTAAAGG-TCTGTCTGCTTGGTGGGGA-TGGTGGTATTACATTTGATG 270147 Query 281657 ATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 281716 | | || |||| || ||||| ||||| | ||||| ||||||||||| ||||| | Sbjct 270146 AGAACAGTTATAACTCCTCCAGCAGTTTCAATTCCAAGGGAAAGAGGAGTCACATCCAAC 270087 Query 281717 AGGACAATATTTTGAAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGC 281775 || | | | || | |||||| | | ||| |||| ||| || || |||| ||| Sbjct 270086 AGCAGCAAGTCCTGCACATTTTCAGATTTGTCTCCAGACAA-AATGGCAGCCTGAACAGC 270028 Query 281776 AGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAA 281835 |||||||| |||||||| ||||||||||| | | | || || | || |||||||| Sbjct 270027 TGCACCATAAGCAACAGCCTCATCAGGATTGATGCTCTTGTTGAGCTCCTTGCCATTGAA 269968 Query 281836 AAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 281894 || | | ||||| | ||| | || || || |||| || || || || | || | Sbjct 269967 GAAGTCTTGCAGAAGCT-TCTGGATTTTGGGGATGCGAGTGGAACCACCCACCAGGACGA 269909 Query 281895 TTTCATGCACCTGTGATTTATCCAGTTTTGAATC 281928 | ||||| | ||||||||||| || || | ||| Sbjct 269908 TGTCATGAATTTGTGATTTATCTAGCTTGGCATC 269875 >seq15244 Length=336998 Score = 116 bits (128), Expect = 3e-20 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| ||||||||||||||| ||||| || |||| | ||| Sbjct 323901 TTTTTGTCCAAGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCGGAGCACA 323842 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || |||||||| || |||| |||||||| ||||| || | ||| |||||||| ||||| Sbjct 323841 TTGAGACCAGCGATGGTTCCAGCATCTTTTGTGGCCTGACGTTGGGAATCGTTGAAATAG 323782 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 || || || || | || |||| ||| || Sbjct 323781 GCTGGTACTGTGACCACAGCATTTGTGAC 323753 >seq22416 Length=3480846 Score = 105 bits (116), Expect = 5e-17 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| || || ||||| |||||||||||||| |||||||| ||| | ||||||||| | Sbjct 984972 TGTACACTTATCTTGACTGAGGGAGATTCAGCCAAAACATTAGCTGTTTCTGGCCTTGGT 985031 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGT 400412 || |||| ||||| | ||||| |||||||| ||| |||||||| | | ||||| Sbjct 985032 GTGGTTGGGAGAGACAAGTATGGCGTTTTCCCCCTTCGAGGAAAAATACTCAATGT 985087 >seq229 Length=2348100 Score = 96.9 bits (106), Expect = 3e-14 Identities = 144/203 (71%), Gaps = 5/203 (2%) Strand=Plus/Plus Query 282271 AGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 282330 || || |||| | ||||||||||| | | | | |||||| ||| |||||||| Sbjct 1179840 AGAAATATCAAGAGTTCCACCACCTAAGTTGTA---TACTACATTGATT--TTTGTCTTC 1179894 Query 282331 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 282390 ||||| | |||||| || || |||||||| || || ||||| || | || || Sbjct 1179895 AGATTTATTTAAACCATAAGCCAAGGCAGCAGCTGTAGGCTCATTTATCACTCGAGGTAC 1179954 Query 282391 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450 ||| || |||| | | || |||||||| |||| |||| ||| ||||| || ||||| Sbjct 1179955 ATTTAGGCCAGATAGTTGCCCAGCATCTTTGATGGCCTGTCATTGAGAATCATTGAAATA 1180014 Query 282451 TGCAGGAACAGTAATAACGGCAT 282473 ||||| ||||| |||| ||||| Sbjct 1180015 AGCAGGCACAGTGATAATGGCAT 1180037 >seq227 Length=684390 Score = 93.3 bits (102), Expect = 3e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 |||||||| || || |||| ||||||||||||||||| | || |||||||| || ||| Sbjct 483742 GGTTCATTGATTATCCTCATGACATTAAGACCAGCAATAGTACCAGCATCTTTGGTTGCT 483801 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || | || | ||| || ||||| |||||||| |||| ||| |||| Sbjct 483802 TGACGCTGGGCATCATTGAAATAGGCAGGAACGGTAACAACTGCAT 483847 Score = 87.8 bits (96), Expect = 1e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 281437 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 281496 |||||||||||| |||| | ||||| ||||||||||| ||||||||||||| |||| Sbjct 481622 AAGAATACCATTCACATCTATTTCAAAGGTGACTTCAATCTGAGGGACCCCTCGAGGAGC 481681 Query 281497 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 281547 ||| || || || ||| | |||||||||||| | |||||| || || Sbjct 481682 AGGAGGAATTCCCGTCAAGTCAAATGTTCCCAGGAGGTGATTATCCTTGGT 481732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3738864228626124