Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq5745 89.7 5e-13 >seq5745 Length=1884 Score = 89.7 bits (98), Expect = 5e-13 Identities = 298/464 (64%), Gaps = 0/464 (0%) Strand=Plus/Minus Query 20348 GGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTACTGCAAAATCTGGGAGTTCACGCA 20407 || ||||| ||||| || ||| || || || ||| | || | || || || | ||| Sbjct 863 GGATTTGATTGTGCTAGCAAGACTGAAATACAATTAGTACAGAGCCTTGGGGTGCCTGCA 804 Query 20408 GACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCTTCGCATATAACGTATGCCGCTCAA 20467 || |||||| | | ||| ||||| || || || || || | | |||||| || | Sbjct 803 GAGAGGATAATGTGTGCAAATCCATGCAAACAAGTGTCACAATTTAAGTATGCTGCCAAC 744 Query 20468 ACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAAGAGCTTACCAAAATTGATCGCCTG 20527 | ||||||| ||||||||||||||||||||| |||||| | ||| ||| | || Sbjct 743 AATGGAGTACAAATGATGACTTTTGATAGTGAAGTAGAGCTAATGAAAGTTGCCAGAGTG 684 Query 20528 CACCATGATGCTAAGCTGGTACTGAGGATTAAAGTGGATGACTCTAACTCAGACAGCATA 20587 || | | || ||||| || | |||||| |||||||| || | | | | | Sbjct 683 CATCCAAAGGCAAAGCTTGTTTTAAGGATTGCCACTGATGACTCCAAAGCTGTCTGTCAA 624 Query 20588 CTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGCCAACGCCTGCTAAAACAGGCCAAA 20647 || ||||| || ||||| || || || || | || | || || | | || || Sbjct 623 CTAAGTGTTAAATTTGGTGCCACTCTTAAAACTAGTAGGCTACTTCTTGAGCGAGCAAAG 564 Query 20648 AAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCACGTGGGCAGTGGCTGCAAAGATGCA 20707 || | | || | || ||||| || |||||| |||| ||||| || | ||| | Sbjct 563 GAACTGAATGTTGATATTATTGGAGTTAGTTTCCACTTGGGAAGTGGTTGTACTGATCTA 504 Query 20708 CAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAGAGCTTTTGACTTTGGCACGCTGATG 20767 | | | |||| | |||| ||| | | |||||| | || | | | Sbjct 503 GAAACCTTTGTCCAAGCAGTTTCTGATGCCTAATGTGTCTTTGACATGGGGGTGGAGTTT 444 Query 20768 GGCTTTGACATGTACCTCTTGGATATTGGTGGCGGCTTTCCCGG 20811 || ||| ||||||| || | ||||||||||| |||||||| || Sbjct 443 GGTTTTAACATGTATCTTCTTGATATTGGTGGTGGCTTTCCTGG 400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463337155132320