Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq22501 105 1e-17 >seq22501 Length=2343730 Score = 105 bits (116), Expect = 1e-17 Identities = 128/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 |||||| | || | |||||||||| | | || ||||| | || || || |||||||| Sbjct 1772558 GATAGCTGGGGCTCTGTGGTGGTACTTTGTGTCAAAAGGAGTTGAGTATTTGGATACAGT 1772499 Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTC-TACACGTATATCATCATT 58487 ||| ||||| || ||||| || ||||| || | ||||| | || || |||||||| | Sbjct 1772498 GTTCTTCATTCTGAGGAAGAAAAACAATCAAGT-ATCTTTCCTTCATGTGTATCATCACT 1772440 Query 58488 TTACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 |||||||||||| || | ||| | || ||||| ||| | |||||||| || Sbjct 1772439 GTACTATGTTTACATTGTGGTGGATTGGCATTAAGTGGGTAGCAGGAGGACA 1772388 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600 |||||||| || |||||| | ||||||||||||||||| ||||||||| |||||||| Sbjct 1769244 GCATTTTTTGGAGCTCAGCTTAATTCTTTTATCCATGTGATTATGTATTCATATTATGGC 1769185 Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660 | | || | ||| | | || | || ||||| |||||||| || ||| | || ||| Sbjct 1769184 TTAACTGCATTTGGCCCATGGATTCAGAAATATTTGTGGTGGAAACGATACTTGACCATA 1769125 Query 58661 ATGCAATTGGTA 58672 |||| |||||| Sbjct 1769124 TTGCAGTTGGTA 1769113 Score = 84.2 bits (92), Expect = 4e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 58100 GATAAACGTGTAGATAATTGGTTGTTAATGAATTCTCCTATTCCTACGATATGTATAAGT 58159 ||||||||||| || || ||| || ||| | ||||| | ||||| ||||||||||| Sbjct 1787306 GATAAACGTGTTGAAAACTGGCCTTTGATGCAGTCTCCATTGCCTACATTATGTATAAGT 1787247 Query 58160 ACTTTGTATCTAATCATCGTCTGGTTAGGACCTAAATGGATGAAAACTAGAAACGCGTTT 58219 ||| | |||||| | | || ||| | ||||| ||||||||||| | ||| | | || Sbjct 1787246 ACTCTTTATCTACTTTTTGTGTGGCTGGGACCCAAATGGATGAAGAACAGAGAACCCTTC 1787187 Query 58220 AATATCAGATGGTTGTTGGTCTTATATAATTTTTCTATGGTATTTCTAAACTTTTATAT 58278 | || | | ||||| | | ||||||||| ||||| || || ||| | | ||| Sbjct 1787186 CAGATGCGTTTAGTGTTGATTATCTATAATTTTGGAATGGTTTTACTTAACATGTTTAT 1787128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903004958568640