Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq22597 132 5e-26 seq7240 123 2e-23 seq22615 105 6e-18 >seq22597 Length=1249212 Score = 132 bits (146), Expect = 5e-26 Identities = 154/206 (75%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGC 133514 ||| | |||||| |||||||| || ||||| || || || |||| ||| || ||| Sbjct 1181527 ATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGT--ACGACCGTCTTCCAGC 1181470 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | ||||||| ||||||||| ||||||||||| || ||||| ||| Sbjct 1181469 TGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTGTCTTGGATT 1181410 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || |||| | ||||| || || |||||||||| || | ||||| ||| || || Sbjct 1181409 TTGGTTTTGACATTCTCAATAGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCT 1181350 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||||| || || |||||||| Sbjct 1181349 GTCAGGGTTTTCACAAAGATCTGCAT 1181324 Score = 132 bits (146), Expect = 5e-26 Identities = 156/206 (76%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| |||||||| || ||||| || || || ||| | || || |||| Sbjct 1181755 ATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCA-TCTTCCAGCT 1181697 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | ||||||| ||||||||| ||||||||||| || ||||| ||| | Sbjct 1181696 GCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTGTCTTGGAT-T 1181638 Query 133576 TTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || || |||| | ||||| || || |||||||||| || | ||||| ||| ||||| Sbjct 1181637 TTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCC 1181578 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || || |||||||| Sbjct 1181577 GTCAGGGTCTTCACAAAGATCTGCAT 1181552 Score = 132 bits (146), Expect = 5e-26 Identities = 156/206 (76%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| |||||||| || ||||| || || || ||| | || || |||| Sbjct 1182808 ATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCA-TCTTCCAGCT 1182750 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| ||||||||| |||||||||||||| ||||| ||| | Sbjct 1182749 GCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCTTGGAT-T 1182691 Query 133576 TTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || || |||| | ||||| || || |||||||||| || | ||||| ||| ||||| Sbjct 1182690 TTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCACTTCTAGGGTGATGGTCTTGCCC 1182631 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || || |||||||| Sbjct 1182630 GTCAGGGTCTTCACAAAGATCTGCAT 1182605 Score = 127 bits (140), Expect = 2e-24 Identities = 124/157 (79%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || ||||||||||| || | ||||||| ||||||||| ||||||||||| || || Sbjct 1181935 GTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTT 1181876 Query 133565 GTCGGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 ||| ||| ||| || |||| | ||||| ||||| |||||||||| || | ||||| Sbjct 1181875 GTCTTGGAT-TTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTGA 1181817 Query 133624 CGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||||||| ||||| || || || || |||||||| Sbjct 1181816 TGGTTTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1181780 >seq7240 Length=45712 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| || || ||||| || ||||| || || ||| ||| | || || || Sbjct 6437 AAGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCA-TCTTCCAG 6379 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || |||| | | |||||| || || ||||||||||| || || ||| Sbjct 6378 CTGCTTTCCAGCAAAAATTAATCTCTGCTGATCTGGGGGGATGCCTTCTTTATCCTGGAT 6319 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| ||||| | ||||| ||||| ||||||| || || | ||||| ||| ||||| Sbjct 6318 CTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATGGTCTTGCC 6259 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || |||||||||||||| Sbjct 6258 GGTCAAGGTCTTCACGAAAATCTGCAT 6232 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | |||||| |||||||| || ||||| || || || | || || ||| Sbjct 6209 AAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTTCGCCCATCTTCCAGC 6150 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || | | ||||||||| || || |||||||||||||| ||| Sbjct 6149 TGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC-CTGAAT 6091 Query 133575 TTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| | ||||| | ||||| ||||| |||||||||| || | ||||| ||| ||||| Sbjct 6090 TTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTCTTGCC 6031 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || |||||||| Sbjct 6030 AGTCAAGGTCTTCACAAAGATCTGCAT 6004 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 133541 CTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTC 133600 |||||| || ||||||||||| || || ||||||| ||||| | |||| || || Sbjct 6579 CTGGTCTGGGGGGATGCCTTCTTTATCCTGGATCTTTGCCTTGACATTTTCAATGGTATC 6520 Query 133601 GGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || | ||||| ||| ||||| |||| || || |||||||||||||| Sbjct 6519 ACTGGGTTCTACTTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAAATCTGCAT 6460 >seq22615 Length=203576 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | |||||| || ||||| || ||||| || || || | || || ||| Sbjct 193075 AAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCCAGC 193016 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || | | |||||| || || ||||||||||| || || |||| Sbjct 193015 TGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATGCCTTCTTTATCCTGGATC 192956 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||||| | ||||| ||||| |||||||||| || | ||||| |||||| || Sbjct 192955 TTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTTTTACCA 192896 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || |||||||| Sbjct 192895 GTCAAGGTCTTCACAAAGATCTGCAT 192870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483203417751760