Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq8280 174 2e-38 seq22515 143 3e-29 >seq8280 Length=78473 Score = 174 bits (192), Expect = 2e-38 Identities = 597/922 (65%), Gaps = 13/922 (1%) Strand=Plus/Plus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 || |||| |||| ||| |||| ||| ||||| || || ||| || ||| || Sbjct 69351 TTGTGTCTTAGATGCTCCTCTAAACATTGGACTGCAAAAGAGTCAACATCAGTATCAAAT 69410 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 ||||| ||||| | || ||| ||| || |||||| || | ||| || ||| || Sbjct 69411 TTGTTGGCGAAGAAATGGTGCT-GTTG--CAGTATCCAGTTTAAATCTCCTACTCCAAAT 69467 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 | || || || || || || | || | || || ||||| | || || | | || Sbjct 69468 ATACATACAGAACGGACATGAATTCCATTACATGGTGGATATGGAGCTCCCTTGAAAACG 69527 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 || || || |||||||||| || || ||||||| | || ||||||||||| | || Sbjct 69528 TCTCCTTCCAAGTATTGCCATTTCACAAACCTAGCAACTGCATGCATGTCGGAAATATCA 69587 Query 162307 TACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 ||||| | ||| || | | || || ||||| | || | ||| || | |||||||| Sbjct 69588 TACTTAT-TACTGGAAGAGAGTGCACCTGGAACTTCAGGAATTCTTTGAATTGTAGCCCA 69646 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425 || | ||| ||||| ||||| || || || | ||| || || || | | || | | Sbjct 69647 CAAATATTCATCTGGGCTATATGTATCTTTAGCCCATTCAATAAATTTCAGGATCTTCCC 69706 Query 162426 ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAA 162485 || ||| | || || || ||| | |||| |||||| || || || ||||| Sbjct 69707 ATTAGTTAGGACATACTCTACATACTTCCTACTAACAACAAAGTAGGCACTGCCTGAAAA 69766 Query 162486 CACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTC 162545 | ||| | |||||||| | || |||| || ||||| || | | ||||| Sbjct 69767 AATTGGTGTTTCAATAGGAGGAAGTGACTTATCTTTTCCTGTGTTTTTTAGCTTGCCCTC 69826 Query 162546 TACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTTCGGTCTC 162605 | || | | |||| ||||||| | ||| || || | | ||| || || Sbjct 69827 AATAACTTCATAATGCTTCTTCCACCTTACTTCTTTATGGGAAGGCATTTTTTCAGTTTC 69886 Query 162606 TAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAG 162665 || ||||| | | | | || | ||| |||| | | || || |||||||| |||| Sbjct 69887 TAAGCTGTTTCCATTCACTAAAGACTTTAGCTTCCTTATTATTTCCAGATTGGTTTTAAT 69946 Query 162666 GGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCA--CTTAACGCTGAGTCCGTAC 162723 || || || |||| || ||||| || | ||||||||| || ||| || ||| ||| Sbjct 69947 TGGGAAATCCATGCCACAAAGATTTATCAAATATTTCCATTCTGAACTCT--GTCTGTAG 70004 Query 162724 AGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTC 162783 ||||| | ||||| | ||| || ||||| | |||||| || || ||||| || || Sbjct 70005 AGATCTCTCATGCAGTTGATATCCGCTTGGACCCTACTCCATGATGCATACACAACATTC 70064 Query 162784 TCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGT 162843 |||| | |||| | |||| ||| | |||||| || | || ||| |||| || | Sbjct 70065 TCCAGTTGACTGGCAATGAAGATATTATTGAAACAAGATGCAATGCCCTTCACTGCTGCT 70124 Query 162844 GAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGT 162901 | || || || | ||| | || || || | ||| || ||||||||| | || Sbjct 70125 AAAAAGGATTCAGG--AGATTTTTTGTCAACATGAATGCAATAATAATTCTGAGGTGTGT 70182 Query 162902 AGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACG 162961 |||| | || || | || || | ||| || || || || | ||||| || ||||| | Sbjct 70183 AGATAGTTCTTAGGAGCCTATCAAGCATTTCAATTTTGTGATAAACCACTATTGAATATG 70242 Query 162962 CTATGGGGAACTCAGCCTCCTC 162983 | ||||| || || ||||| || Sbjct 70243 CAATGGGAAATTCTGCCTCTTC 70264 >seq22515 Length=2944035 Score = 143 bits (158), Expect = 3e-29 Identities = 389/589 (66%), Gaps = 11/589 (2%) Strand=Plus/Minus Query 176965 TGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCG 177024 |||| || | ||| |||||||| | || || |||| |||| || || || || || | Sbjct 1374806 TGTAATCTTCCACATGAATGAAGGAATCCCCTGGGATAAAATTCTCATAGTTTTCCCTAG 1374747 Query 177025 ATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAA 177084 ||| || || || | ||||| | ||| |||| || | |||||||||||| |||| Sbjct 1374746 ATGGACCAAGCACAACAGGTACTGTACCAGCCAGAAATGCATTGTAGAGTTTTTCAGTAA 1374687 Query 177085 TATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAGGAAGATA--GTAG 177142 | || || |||| | ||||| ||||| | || || |||||||| | ||||| ||| Sbjct 1374686 TGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGGTAAAATTTACAAGTAGATATGGTA- 1374628 Query 177143 CGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATC 177202 || || || | ||| | ||| ||||| | | | | || || ||| || || Sbjct 1374627 -GGAATCAAACTTTTATCATTCACATATTCTCCAAATGCTTGTCCATAAGTATGAATTTC 1374569 Query 177203 TATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGTGGTCGTTGTTCCAATTGC 177261 ||| |||||| ||||| ||| || || || ||| | || || ||||| || | Sbjct 1374568 AATGCTTTTACTCAGCTCACTGTAATA-CTTGACTCTTGCATGCTCAGGATTCCAGTTAC 1374510 Query 177262 TGACGACCCAGCAAACTAACTTGCTCTTTGCGGGAACGGGATTCGATACTAATGCAGTGT 177321 | || |||||||| |||| ||| |||| || || ||| | || | ||| | Sbjct 1374509 TAACAACCCAGCACACTAGCTTCTTCTTGCTTGGCAC----TTCAAACACAAAGGAGTTT 1374454 Query 177322 CT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAAC 177380 | || | || | | ||||| ||||| || ||||||||||| || | || || | Sbjct 1374453 GTGCTTACTGTCATGAAGCCATAAGGCACTTGTATATCCGAGTCTCGGCGATAGGTCAGA 1374394 Query 177381 GTGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAGGGGCTGTTACTGGGCGATTCTAAG 177440 || || ||||| || | ||| ||||| ||| ||| | | | || ||||| ||| Sbjct 1374393 GTTAGGTTGAAGAGATGTTCAATACCACTTTTCTGGGGTGTATGGGTAGGGGATTCCAAG 1374334 Query 177441 TTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGTATAAGGATCT 177500 |||||||| |||||||| || || | ||| | | || | |||| | || | |||| Sbjct 1374333 TTCATCCAAATCCACTTCTGGAATGGTGGCCGAGCTTGCTGGGGTAAATTAGTAAGATCC 1374274 Query 177501 ATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCTTTGTAATAAA 177549 ||| || |||| ||| |||| | || |||| || ||||| |||| Sbjct 1374273 CAACTGATGTCTCGGTGATGAATCAGAACAGCATGGGATTTGTTGTAAA 1374225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578171893590400