Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq7240 132 3e-26 seq22615 122 6e-23 seq22597 100 2e-16 seq6982 93.3 3e-14 >seq7240 Length=45712 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || ||||| || | ||||| || || ||| ||||| || |||||||| || | Sbjct 7304 CACCTCCCCTCAAGCGCAGGACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAG 7245 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || || || | || |||| || ||||| ||||| ||||| | |||||| ||| | | Sbjct 7244 ACAGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGG 7185 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||||||||| |||||| | | |||| || | |||||| || | ||| Sbjct 7184 GAATGCCTTCTTTGTCTTGAATTTT-GGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 7126 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| |||||||| || || ||||| |||||||||||||| Sbjct 7125 ACTTCAAGGGTGATGGTTTTACCGGTCAAGGTTTTCACAAAGATCTGCAT 7076 Score = 118 bits (130), Expect = 7e-22 Identities = 174/243 (72%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || |||||||| | ||| | ||||| || || ||| ||||| || ||| Sbjct 6242 AAAATCTGCATCCCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGATTCTTTCTGGATG 6183 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || || | || || | || |||| || ||||||||||| ||||| | |||| Sbjct 6182 TTGTAGTCAGACAAGGTTCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGC 6123 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || ||| | || | ||||| ||||| |||||| | | |||| || | |||||| Sbjct 6122 TGGTCTGGGGGAATGCCTTCCTTGTCCTGAATTTT-GGCCTTGACATTCTCAATGGTGTC 6064 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| |||| ||||| || || || || || || || |||||||||||||| Sbjct 6063 ACTGGGCTCCACTTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 6004 Query 33750 AGT 33752 || Sbjct 6003 TGT 6001 >seq22615 Length=203576 Score = 122 bits (134), Expect = 6e-23 Identities = 173/240 (72%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || |||||||| | ||| | ||||| || || ||| || || || ||| Sbjct 193108 AAAATCTGCATCCCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGATTCCTTCTGGATG 193049 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || || || || || | || |||| || ||||| ||||| ||||| | |||| Sbjct 193048 TTGTAGTCAGACAGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGC 192989 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTC 33689 |||||| | || | |||||||| || || || || | |||| ||| |||||| Sbjct 192988 TGATCTGGGGGGATGCCTTCTTTATCCTGGATCTT-TGCCTTGACATTCTCAATGGTGTC 192930 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| |||| ||||| |||||||| || || || || |||||||||||||| Sbjct 192929 ACTGGGCTCCACTTCAAGGGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 192870 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | || || || ||||| ||||| || |||||||| || || Sbjct 192868 CCACCTCTGAGACGAAGGACTAAGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCAGAC 192809 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || ||||||||||||||||| | |||||| ||| | || Sbjct 192808 AGGGTGCGACCATCTTCCAGCTGCTTTCCGGCAAAAATCAATCTCTGCTGGTCTGGGGGG 192749 Query 33643 ACACCTTCTTTGTC 33656 | |||||||| || Sbjct 192748 ATGCCTTCTTTATC 192735 >seq22597 Length=1249212 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||| | |||| ||| || ||| ||||| || |||||||| || || Sbjct 1181551 ACCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 1181492 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || |||| |||| || || || ||||| || | | |||||| || | || Sbjct 1181491 CAGGGTACGACCGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGG 1181432 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCA 33700 | || |||||||| ||||| |||| |||| ||| || || || | |||| Sbjct 1181431 GATGCCCTCTTTGTCTTGGATTTTG-GTTTTGACATTCTCAATAGTATCACTGGGCTCCA 1181373 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 | || | ||||| || || ||||| | ||||| |||||||||||||| || Sbjct 1181372 CCTCCAGGGTGATGGTCTTCCCTGTCAGGGTTTTCACAAAGATCTGCATTGT 1181321 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | |||| ||| || ||| ||||| || |||||||| || || Sbjct 1182831 CCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1182772 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| || || || ||||| || | | |||||| || | || Sbjct 1182771 AGGGTACGACCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGG 1182712 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| ||||| | || |||| || | || || || | ||||| Sbjct 1182711 ATGCCTTCTTTGTCTTGGATTTT-GGCTTTGACATTCTCAATAGTATCACTGGGCTCCAC 1182653 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | || || ||||||||||||||| Sbjct 1182652 TTCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATA 1182604 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||| | |||| ||| || ||| ||||| || |||||||| || || Sbjct 1181779 ACCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 1181720 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || |||| || || || ||||| || | | |||||| || | || Sbjct 1181719 CAGGGTACGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGG 1181660 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCA 33700 | || |||||||| ||||| ||| | ||| ||| || || || | |||| Sbjct 1181659 GATGCCCTCTTTGTCTTGGATTTTGGCTTTGA-CATTCTCAATAGTATCACTGGGCTCCA 1181601 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || ||||||||||||||| Sbjct 1181600 CTTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATA 1181551 >seq6982 Length=3457922 Score = 93.3 bits (102), Expect = 3e-14 Identities = 136/189 (72%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 ||||| || |||||||| || || || || | | || |||| || ||||| ||| | Sbjct 878039 TCTTTCTGGATGTTGTAGTCAGACAGGGTACACCCATCTTCCAGCTGGTTTCCAGCACA- 878097 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| | |||||| ||| | || | |||||||| || |||||| || | ||| Sbjct 878098 -TCAATCTCTGCTGGTCTAGGGGAATGCCTTCTTTATCTTGAATTTTGGCCTTGA-CATT 878155 Query 33679 GTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| ||| || || | |||||| |||| ||||| |||||||| || || ||||| || Sbjct 878156 CTCAATGGTATCACTGGGTTCCACTTCAAGGGTGATGGTTTTACCGGTCAAGGTTTTCAC 878215 Query 33738 AAAGATCTG 33746 ||||||||| Sbjct 878216 AAAGATCTG 878224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328559885278080