Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq22615 89.7 1e-12 seq7240 87.8 4e-12 >seq22615 Length=203576 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| || || |||||||| || || ||| || ||| | || || Sbjct 192717 GTCAAGGCAAAGATCCAGGATAAAGAAGGCATCCCCCCAGACCAGCAGAGATTGATTTTT 192776 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| |||||||||| | || || | || |||||| |||||||||| || Sbjct 192777 GCCGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAACATCCAGAAAGAATCA 192836 Query 206365 ACTCTTCAC 206373 ||||||||| Sbjct 192837 ACTCTTCAC 192845 >seq7240 Length=45712 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || || ||||| | |||||||| |||| Sbjct 6007 CAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAAGTGGAGCCCAGTGAC 6066 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || ||||| || || ||||| ||| || ||| || Sbjct 6067 ACCATTGAGAATGTCAAGGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGACCAGCAG 6126 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| |||||||||||| |||||||||| | || ||| | || |||||| || Sbjct 6127 AGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGAACCTTGTCTGACTACAACATC 6186 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 |||||||| || || || ||| Sbjct 6187 CAGAAAGAATCCACCCTGCAC 6207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181276078850054