Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq7240 111 1e-19 seq22597 104 2e-17 seq22615 102 8e-17 >seq7240 Length=45712 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| ||||| || | | | || ||||| || ||||||||||| || |||||| Sbjct 7294 CAAGCGCAGGACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACG 7235 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | |||||| ||||| || || | | |||| | | ||| || ||||| || |||||||| Sbjct 7234 CCCATCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTC 7175 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || |||||| || | | || | || || | ||||||||||| | || Sbjct 7174 TTTGTCTTGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGT 7115 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | |||||||| |||| ||||| | || |||||||| Sbjct 7114 GATGGTTTTACCGGTCAAGGTTTTCACAAAGATCTGCAT 7076 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | || ||||| || ||||||||||| || ||| ||| |||||| Sbjct 6212 ACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTTCGCCCATCTTCC 6153 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| | |||| | | ||| || ||||| || |||||||| || || | Sbjct 6152 AGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGA 6093 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | || | || || | ||||||||||| | || | || || Sbjct 6092 ATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTCTTG 6033 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| || || | || |||||||| Sbjct 6032 CCAGTCAAGGTCTTCACAAAGATCTGCAT 6004 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | || || || || ||||||||||| || ||| || |||||| Sbjct 6440 ACCAAGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 6381 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || || | | | |||| | ||| |||||||| || |||||||||||||| Sbjct 6380 AGCTGCTTTCCAGCAAAAATTAATCTCTGCTGATCTGGGGGGATGCCTTCTTTATCCTGG 6321 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || ||| || | | || | || || | ||||| ||||| | || | || || Sbjct 6320 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATGGTCTTG 6261 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||| || || | |||||||||||| Sbjct 6260 CCGGTCAAGGTCTTCACGAAAATCTGCAT 6232 >seq22597 Length=1249212 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| ||| | | | || ||||| || ||||||||||| || |||||| | Sbjct 1182819 CGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCA 1182760 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| || | ||| || || ||||| ||||||||||| Sbjct 1182759 TCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTG 1182700 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | || | |||||| | ||||||||||| | || | Sbjct 1182699 TCTTGGATTTTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCACTTCTAGGGTGATG 1182640 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||| || || | || |||||||| Sbjct 1182639 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1182605 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| ||| | | | || ||||| || ||||||||||| || |||||| | Sbjct 1181766 CGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCA 1181707 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| || | ||| || || ||||| ||||| ||||| Sbjct 1181706 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTG 1181647 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | || | |||||| | ||||||||||| | || | Sbjct 1181646 TCTTGGATTTTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCACTTCCAGGGTGATG 1181587 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||| || || | || |||||||| Sbjct 1181586 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1181552 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| ||| | | | || ||||| || ||||||||||| || |||||| Sbjct 1181538 CGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCG 1181479 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| || | ||| || || ||||| ||||| ||||| Sbjct 1181478 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTG 1181419 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | || | |||||| | |||||||| || | || | Sbjct 1181418 TCTTGGATTTTGGTTTTGACATTCTCAATAGTATCACTGGGCTCCACCTCCAGGGTGATG 1181359 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||| ||||| | || |||||||| Sbjct 1181358 GTCTTCCCTGTCAGGGTTTTCACAAAGATCTGCAT 1181324 >seq22615 Length=203576 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | || || || || ||||||||||| || ||||||| |||||| Sbjct 193078 ACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCC 193019 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || || | | |||| | | ||| |||||||| || |||||||||||||| Sbjct 193018 AGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATGCCTTCTTTATCCTGG 192959 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || ||| || | | || | || || | ||||||||||| | || | |||||| Sbjct 192958 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTTTTA 192899 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| || || | || |||||||| Sbjct 192898 CCAGTCAAGGTCTTCACAAAGATCTGCAT 192870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476396879858640