Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq22597 87.8 2e-12 seq7240 84.2 2e-11 >seq22597 Length=1249212 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || | || || || | ||||| | ||||| || ||| Sbjct 1181552 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 1181611 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| ||| | || ||| ||||| || |||||||| || || || || ||| Sbjct 1181612 GATACTATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAGGGCATCCCTCCTGACCAG 1181671 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || || ||||| | | ||||| || || ||||||| | | | |||| | | |||| Sbjct 1181672 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCTG--ACTACA 1181729 Query 25353 ATATTCAAAAAGAATCCACCATTCAT 25378 | || || |||||||||||| ||||| Sbjct 1181730 ACATCCAGAAAGAATCCACCCTTCAT 1181755 Score = 82.4 bits (90), Expect = 7e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| | || || || | ||||| | || || || ||| Sbjct 1181324 ATGCAGATCTTTGTGAAAACCCTGACAGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 1181383 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| ||| | || ||| ||||| || |||||||| || || || || ||| Sbjct 1181384 GATACTATTGAGAATGTCAAAACCAAAATCCAAGACAAAGAGGGCATCCCTCCTGACCAG 1181443 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || || ||||| | | ||||| || || ||||| | | | | |||| | | |||| Sbjct 1181444 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGACGGTCGTACCCTGTCTG--ACTACA 1181501 Query 25353 ATATTCAAAAAGAATCCACCATTCAT 25378 | || || |||||||||||| ||||| Sbjct 1181502 ACATCCAGAAAGAATCCACCCTTCAT 1181527 >seq7240 Length=45712 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| || ||||| ||| | ||||| | ||||| || ||| Sbjct 7076 ATGCAGATCTTTGTGAAAACCTTGACCGGTAAAACCATCACCCTTGAAGTGGAGCCCAGT 7135 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || || |||||| || ||||| || || || || || ||| Sbjct 7136 GACACCATTGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGCATTCCCCCAGACCAG 7195 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || ||| | || | | || || || || ||||||| | | |||| | | |||| Sbjct 7196 CAGAGATTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGTACCCTGTCTG--ACTACA 7253 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | || || |||||||||||| |||| || || | | ||||| ||||| Sbjct 7254 ACATCCAGAAAGAATCCACCCTTCACTTGGTCCTGCGCTTGAGGGGAGG 7302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444894252175680