Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq15588 152 6e-32 seq7675 100 3e-16 seq27282 96.9 4e-15 seq6894 91.5 2e-13 seq22368 86.0 7e-12 seq27279 82.4 9e-11 >seq15588 Length=89053 Score = 152 bits (168), Expect = 6e-32 Identities = 224/317 (71%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||| ||||||||| ||| |||| | | || || ||| | ||||| |||||| Sbjct 38757 GTGGTGACTGAGGATGAGACAGTGATGCTAGAGAGACCTGCTTCCTTAAAATGTTCCCTG 38698 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 |||||| ||| ||| | |||| ||||| ||||||||| ||| | ||||| Sbjct 38697 CAGACTCTTCAAGAGATCATGATAGTCACATGGCAGAAACTCATTTATGGAAGACCAGAA 38638 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| |||||| ||| || | || || | || |||| || ||||| ||||| || Sbjct 38637 AACATGGCAACTTTCAGCCAACAACATGGAATAGTAATCCAACCAGCTTACAAGGATAAA 38578 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||| | || ||||||| |||||| | ||| |||||||||| ||| || | | Sbjct 38577 ATAGAAATAACCCAGCCGGGACTCAGTGAATCAGCCATCACTTTCCTGAAAACTTCAGTT 38518 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| ||||| ||||| ||| ||||||||| |||||| ||| | | |||| || Sbjct 38517 GAGGATGAGGGATGCTATTTATGCATCTTTAACATCTTTGGTGTTGGAACAGTCTCAGGA 38458 Query 171372 GTGGCCTGCCTCACCCT 171388 ||||||||| ||| Sbjct 38457 AAAACCTGCCTCAGCCT 38441 >seq7675 Length=222078 Score = 100 bits (110), Expect = 3e-16 Identities = 160/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 146871 AATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAG-CTGAATTTTCAGGGGCTCCA 146929 ||| |||||||| ||||| |||| || ||| || | |||||||||||| ||| | Sbjct 43569 AATTTTGAGCTTAGGGAAAGGTCTTGG-TTCTTGCTGAAACTGAATTTTCAGTAGCTTAA 43511 Query 146930 CGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTG-TGCACAAAGTCCCCCGGCTTAAGG 146988 | || ||||| | || | || ||||| | || ||||| || || ||||| ||| Sbjct 43510 TACGATTCAGGTATATATGAGTATCTCCCAGAATTATGTACAAATTCACCTGGCTTTAGG 43451 Query 146989 CCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACC 147048 || | || ||||||| ||||||||||||||| || || ||||| |||||||| | | | Sbjct 43450 CCTTTGACTTGGGCCATCATGTAGGTGAGCAGGGAATAACTGGCAATGTTGAACAGCATC 43391 Query 147049 CCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCT 147094 | || ||| || || || || || || | || || ||||||| Sbjct 43390 CTGAGACCCTCATCTCCAGATCTTTGATATAACTAACAAGAGAGCT 43345 >seq27282 Length=2735080 Score = 96.9 bits (106), Expect = 4e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| | |||||| | | || ||| | || |||| | ||||| | || | || || Sbjct 751799 GTACTCCTTTGTGTTTATTGTGGGCCTACTGGGTAATGTCATGGTGTTGCTGATTCTTAT 751858 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||||||||||| ||| || ||||||||||||| ||| |||||| || || || || Sbjct 751859 TAAGTACAAGAGATTCAAGAGTATGACCAACATCTACCTCTTCAACTTGTCCATTTCAGA 751918 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||||| | | |||| || ||||| |||||||||| Sbjct 751919 CCTGCTTTTCCTGCTCACACTTCCCTTCTGGATTCACT 751956 >seq6894 Length=939852 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| || || || || || || | ||||||||||||||| || || ||||| |||||||| Sbjct 59439 CTTCAGACCTGTGACATGAGCAATCATGTAGGTGAGCAGGGAATAACTGGCAATGTTGAA 59380 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || ||||| |||||||| || || || | || || | ||| || |||||||| || | Sbjct 59379 CGGCACCCCGAGGCCCATATCTCCAGATCGTTGATATAACTGACAAGAGAGCTCGCCATT 59320 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 | || ||||| || || ||| || || |||| ||||| Sbjct 59319 CAGTATATAGAACTGACAGAGAGCGTGACATGGAGGCAATGCCAT 59275 >seq22368 Length=3959369 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 || ||||| |||| ||||||||||||||||| |||||| ||||||| |||| || |||| Sbjct 3191934 AGAGTTACCTGGGCTGCCAGGCCTTGTCAGACATGATTACGTTTTACCTGGAAGATGTGA 3191875 Query 178291 TGCCTCAGGCCGAGAAT 178307 | |||| ||| |||||| Sbjct 3191874 TACCTCGGGCAGAGAAT 3191858 >seq27279 Length=1836333 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 || ||||||||||| ||||||| || | ||||| | ||||| | || |||||| | Sbjct 20069 TATTCTCTGGTGTTCCTGTTTGGTCTGCTGGGCAACCTCATGGTGGTTCTGGTCCTCCTC 20010 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || |||||| |||| | |||||| | | | |||||||||||| ||| | |||| Sbjct 20009 AAATACAAGCGGCTTAAATCCATGACTGATGTGTACCTGTTCAACCTCGCCATCTCTGAC 19950 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGG 8760 ||||| | |||| ||||||| || ||| Sbjct 19949 CTGCTCTTTGTTTTTTCCCTCCCTTTCTGG 19920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583225620033600