Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq22597 93.3 3e-14 >seq22597 Length=1249212 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| || || |||| ||||||||||| ||| | ||| || ||| | Sbjct 1182605 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTAGAAGTGGAGCCCAGT 1182664 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || ||| ||||| |||||||||||| | || ||| || Sbjct 1182665 GATACTATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATCCCTCCTGACCAG 1182724 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || |||||||| | ||| ||||| || | |||||| | || || || |||||| Sbjct 1182725 CAGAGGCTTATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 1182784 Query 106440 ATACAAAAAGAATCTACACTACAT 106463 || || |||||||| || || ||| Sbjct 1182785 ATCCAGAAAGAATCCACCCTTCAT 1182808 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| || || |||| ||||||||||| ||| ||||| || ||| | Sbjct 1181552 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 1181611 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || ||| ||||| |||||||| ||| | || ||| || Sbjct 1181612 GATACTATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAGGGCATCCCTCCTGACCAG 1181671 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || ||||| || | ||| ||||| || | |||||| | || || || |||||| Sbjct 1181672 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 1181731 Query 106440 ATACAAAAAGAATCTACACTACAT 106463 || || |||||||| || || ||| Sbjct 1181732 ATCCAGAAAGAATCCACCCTTCAT 1181755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402153205376192