Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17]
35,974 sequences; 3,174,693,010 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq22586 183 4e-40
seq25317 167 3e-35
seq22448 167 3e-35
seq23105 122 1e-21
seq23144 107 3e-17
>seq22586
Length=2399975
Score = 183 bits (202), Expect = 4e-40
Identities = 180/231 (78%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971
|||||||||||||||||||||| |||||| |||| |||| ||| |||| |||
Sbjct 41569 TCTACAAGGTGCTCAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 41622
Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031
|| ||||||||||| || ||||||||||| |||| ||||||| | |||||| |
Sbjct 41623 TGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCCC 41682
Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091
||||||| | || |||||||||| ||| ||| | || ||||||||||| |||||||
Sbjct 41683 GCCTGGCCCACTACAACAAGCGCTCCACCATCACTTCCCGGGAGATCCAGACGGCCGTGC 41742
Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| | ||| ||| || ||||||| ||||||||| || ||||||||||
Sbjct 41743 GCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCGGAGGGCACCA 41793
Score = 179 bits (198), Expect = 5e-39
Identities = 179/231 (77%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971
||||||||||||| |||||||| |||||| |||| | ||| || |||| |||
Sbjct 40778 TCTACAAGGTGCTGAAGCAGGTCCACCCCGACACCGGT-----ATC-TCTTCCAAGGCCA 40831
Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031
|| ||||||||||| || ||||||||||| |||| ||||||| || ||||| ||
Sbjct 40832 TGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCAGTGAGGCTTCTC 40891
Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091
||||||| | || |||||||||| ||| ||| | || ||||||||||| |||||||
Sbjct 40892 GCCTGGCCCACTACAACAAGCGCTCCACCATCACTTCCCGGGAGATCCAGACGGCCGTGC 40951
Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| | ||| ||| || ||||||| ||||||||| || ||||||||||
Sbjct 40952 GCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCGGAGGGCACCA 41002
Score = 174 bits (192), Expect = 2e-37
Identities = 178/231 (77%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971
|||||||||||||||||||||| |||||| |||| |||| ||| |||| |||
Sbjct 38837 TCTACAAGGTGCTCAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 38784
Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031
|| ||||||||||| || ||||||||||| |||| |||||| |||||| |
Sbjct 38783 TGGGCATCATGAACTCTTTCGTCAACGACATCTTCGAGCGCATCTCGGGCGAGGCGTCCC 38724
Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091
||||||| | || |||||||||| ||| ||| | || ||||||||||| |||||||
Sbjct 38723 GCCTGGCCCACTACAACAAGCGCTCCACCATCACTTCCCGGGAGATCCAGACGGCCGTGC 38664
Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| | ||| ||| || ||||||| ||||||||| || ||||||||||
Sbjct 38663 GCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCGGAGGGCACCA 38613
Score = 95.1 bits (104), Expect = 2e-13
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 725033 CCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCG 725092
|||||| | || |||||||||| ||| ||| | || ||||||||||| ||||||||
Sbjct 1 CCTGGCCCACTACAACAAGCGCTCCACCATCACGTCCCGGGAGATCCAGACGGCCGTGCG 60
Query 725093 CCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|||| | ||| ||| || ||||||| ||||| ||| || ||||||||||
Sbjct 61 CCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGACGTGTCGGAGGGCACCA 110
>seq25317
Length=5404
Score = 167 bits (184), Expect = 3e-35
Identities = 175/229 (76%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| ||| ||| |||||
Sbjct 23 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCCTCCAAAGCCATG 76
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || |||||||| || |||| ||||||| | |||||| |||
Sbjct 77 GGCATCATGAACTCCTTCGTCAACGATATCTTCGAGCGCATCGCCGGCGAGGCGTCCCGC 136
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| | |||||| ||| ||| ||| | || ||||||||||| ||||||||
Sbjct 137 CTGGCGCATTACAACAAACGCTCCACCATCACGTCCCGGGAGATCCAGACTGCCGTGCGT 196
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| ||| || ||||||| ||||||||| |||||||||||||
Sbjct 197 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 245
>seq22448
Length=196367
Score = 167 bits (184), Expect = 3e-35
Identities = 175/229 (76%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| ||| ||| |||||
Sbjct 19528 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCCTCCAAAGCCATG 19475
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || |||||||| || |||| ||||||| | |||||| |||
Sbjct 19474 GGCATCATGAACTCTTTCGTCAACGATATCTTCGAGCGCATCGCCGGCGAGGCGTCCCGC 19415
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| | |||||| ||| ||| ||| | || ||||||||||| ||||||||
Sbjct 19414 CTGGCGCATTACAACAAACGCTCCACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGT 19355
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| ||| || ||||||| ||||||||| |||||||||||||
Sbjct 19354 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 19306
Score = 125 bits (138), Expect = 1e-22
Identities = 166/229 (72%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
|||||||| || |||||||| ||||| || || ||| || |||| | |||
Sbjct 166392 TACAAGGTCCTGAAGCAGGTCCACCCGGACAC-----GGGCATT-TCATCCAAGGCTATG 166445
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
|| |||||||| || || |||||||| | || ||||||| ||||| |||
Sbjct 166446 GGTATTATGAACTCTTTCGTTAACGACATTTTTGAGCGCATCGCTGGAGAGGCGTCCCGC 166505
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| | ||||| ||| ||| ||| | |||| ||||||||||| |||||||||
Sbjct 166506 CTGGCGCATTATAACAAACGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGC 166565
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| || || ||||||| |||||||| |||||||||||||
Sbjct 166566 CTGCTTCTGCCGGGAGAGCTGGCCAAACACGCCGTGTCCGAGGGCACCA 166614
Score = 93.3 bits (102), Expect = 6e-13
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 724977 ATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTG 725036
|| |||||||| ||||||||||| || | || || |||| |||||| || ||
Sbjct 96862 ATTATGAACTCTTTTGTCAACGATATTTTTGAGCGTATCGCTGGCGAGGCGTCCCGTTTG 96803
Query 725037 GCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTG 725096
|||| | |||||||||| ||| || | | ||||| ||||| || |||||||||
Sbjct 96802 GCGCATTACAACAAGCGCTCCACCATAACTTCCAGGGAGATTCAGACGGCTGTGCGCCTG 96743
Query 725097 ATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| ||| ||| || ||||||| || ||||| || ||||||||||
Sbjct 96742 TTGCTGCCCGGGGAGCTGGCCAAACATGCCGTGTCTGAGGGCACCA 96697
>seq23105
Length=22628
Score = 122 bits (134), Expect = 1e-21
Identities = 144/194 (74%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| ||| ||| |||||
Sbjct 189 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCCTCCAAAGCCATG 136
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || |||||||| || |||| ||||||| | |||||| |||
Sbjct 135 GGCATCATGAACTCCTTCGTCAACGATATCTTCGAGCGCATCGCCGGCGAGGCGTCCCGC 76
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| | |||||| ||| ||| ||| | || ||||||||||| ||||||||
Sbjct 75 CTGGCGCATTACAACAAACGCTCCACCATCACGTCCCGGGAGATCCAGACTGCCGTGCGT 16
Query 725094 CTGATCATGCGCGG 725107
||| | ||| |||
Sbjct 15 CTGCTGCTGCCCGG 2
>seq23144
Length=78198
Score = 107 bits (118), Expect = 3e-17
Identities = 163/229 (71%), Gaps = 10/229 (4%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATC--CTCCAACAAGTCCA 724971
||||||||| | ||||||||||||||| || || |||| |||||| || |||
Sbjct 76885 TACAAGGTGTTGAAGCAGGTGCACCCCGACAC-----GGGCATCTTCTCCAA--AG-CCA 76936
Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031
|| ||||||||||| || || || ||||| | || || |||| |||| | |
Sbjct 76937 TGGGCATCATGAACTCCTTCGTTAATGACATCTTTGAGCGTATCGCTGGCGAGACATCCC 76996
Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091
||||||| | | |||||||||| ||| ||| | || ||||||||||| || || |
Sbjct 76997 GCCTGGCACCTTACAACAAGCGCTCCACTATCACGTCCCGGGAGATCCAGACGGCTGTAC 77056
Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
||||| | ||| || || ||||||| |||||| || || || || ||
Sbjct 77057 GCCTGCTGCTGCCTGGGGAGCTGGCCAAGCACGCAGTGTCTGAAGGTAC 77105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7174341441579788
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |