Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq22586 183 4e-40 seq25317 167 3e-35 seq22448 167 3e-35 seq23105 122 1e-21 seq23144 107 3e-17 >seq22586 Length=2399975 Score = 183 bits (202), Expect = 4e-40 Identities = 180/231 (78%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 |||||||||||||||||||||| |||||| |||| |||| ||| |||| ||| Sbjct 41569 TCTACAAGGTGCTCAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 41622 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| | |||||| | Sbjct 41623 TGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCCC 41682 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || |||||||||| ||| ||| | || ||||||||||| ||||||| Sbjct 41683 GCCTGGCCCACTACAACAAGCGCTCCACCATCACTTCCCGGGAGATCCAGACGGCCGTGC 41742 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 41743 GCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCGGAGGGCACCA 41793 Score = 179 bits (198), Expect = 5e-39 Identities = 179/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| | ||| || |||| ||| Sbjct 40778 TCTACAAGGTGCTGAAGCAGGTCCACCCCGACACCGGT-----ATC-TCTTCCAAGGCCA 40831 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| || ||||| || Sbjct 40832 TGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCAGTGAGGCTTCTC 40891 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || |||||||||| ||| ||| | || ||||||||||| ||||||| Sbjct 40892 GCCTGGCCCACTACAACAAGCGCTCCACCATCACTTCCCGGGAGATCCAGACGGCCGTGC 40951 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 40952 GCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCGGAGGGCACCA 41002 Score = 174 bits (192), Expect = 2e-37 Identities = 178/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 |||||||||||||||||||||| |||||| |||| |||| ||| |||| ||| Sbjct 38837 TCTACAAGGTGCTCAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 38784 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| |||||| |||||| | Sbjct 38783 TGGGCATCATGAACTCTTTCGTCAACGACATCTTCGAGCGCATCTCGGGCGAGGCGTCCC 38724 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || |||||||||| ||| ||| | || ||||||||||| ||||||| Sbjct 38723 GCCTGGCCCACTACAACAAGCGCTCCACCATCACTTCCCGGGAGATCCAGACGGCCGTGC 38664 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 38663 GCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCGGAGGGCACCA 38613 Score = 95.1 bits (104), Expect = 2e-13 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 725033 CCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCG 725092 |||||| | || |||||||||| ||| ||| | || ||||||||||| |||||||| Sbjct 1 CCTGGCCCACTACAACAAGCGCTCCACCATCACGTCCCGGGAGATCCAGACGGCCGTGCG 60 Query 725093 CCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | ||| ||| || ||||||| ||||| ||| || |||||||||| Sbjct 61 CCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGACGTGTCGGAGGGCACCA 110 >seq25317 Length=5404 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| ||| ||| ||||| Sbjct 23 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCCTCCAAAGCCATG 76 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || |||||||| || |||| ||||||| | |||||| ||| Sbjct 77 GGCATCATGAACTCCTTCGTCAACGATATCTTCGAGCGCATCGCCGGCGAGGCGTCCCGC 136 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||| ||| ||| ||| | || ||||||||||| |||||||| Sbjct 137 CTGGCGCATTACAACAAACGCTCCACCATCACGTCCCGGGAGATCCAGACTGCCGTGCGT 196 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 197 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 245 >seq22448 Length=196367 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| ||| ||| ||||| Sbjct 19528 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCCTCCAAAGCCATG 19475 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || |||||||| || |||| ||||||| | |||||| ||| Sbjct 19474 GGCATCATGAACTCTTTCGTCAACGATATCTTCGAGCGCATCGCCGGCGAGGCGTCCCGC 19415 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||| ||| ||| ||| | || ||||||||||| |||||||| Sbjct 19414 CTGGCGCATTACAACAAACGCTCCACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGT 19355 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 19354 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 19306 Score = 125 bits (138), Expect = 1e-22 Identities = 166/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 |||||||| || |||||||| ||||| || || ||| || |||| | ||| Sbjct 166392 TACAAGGTCCTGAAGCAGGTCCACCCGGACAC-----GGGCATT-TCATCCAAGGCTATG 166445 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 || |||||||| || || |||||||| | || ||||||| ||||| ||| Sbjct 166446 GGTATTATGAACTCTTTCGTTAACGACATTTTTGAGCGCATCGCTGGAGAGGCGTCCCGC 166505 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | ||||| ||| ||| ||| | |||| ||||||||||| ||||||||| Sbjct 166506 CTGGCGCATTATAACAAACGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGC 166565 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| || || ||||||| |||||||| ||||||||||||| Sbjct 166566 CTGCTTCTGCCGGGAGAGCTGGCCAAACACGCCGTGTCCGAGGGCACCA 166614 Score = 93.3 bits (102), Expect = 6e-13 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 724977 ATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTG 725036 || |||||||| ||||||||||| || | || || |||| |||||| || || Sbjct 96862 ATTATGAACTCTTTTGTCAACGATATTTTTGAGCGTATCGCTGGCGAGGCGTCCCGTTTG 96803 Query 725037 GCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTG 725096 |||| | |||||||||| ||| || | | ||||| ||||| || ||||||||| Sbjct 96802 GCGCATTACAACAAGCGCTCCACCATAACTTCCAGGGAGATTCAGACGGCTGTGCGCCTG 96743 Query 725097 ATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| ||| || ||||||| || ||||| || |||||||||| Sbjct 96742 TTGCTGCCCGGGGAGCTGGCCAAACATGCCGTGTCTGAGGGCACCA 96697 >seq23105 Length=22628 Score = 122 bits (134), Expect = 1e-21 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| ||| ||| ||||| Sbjct 189 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCCTCCAAAGCCATG 136 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || |||||||| || |||| ||||||| | |||||| ||| Sbjct 135 GGCATCATGAACTCCTTCGTCAACGATATCTTCGAGCGCATCGCCGGCGAGGCGTCCCGC 76 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||| ||| ||| ||| | || ||||||||||| |||||||| Sbjct 75 CTGGCGCATTACAACAAACGCTCCACCATCACGTCCCGGGAGATCCAGACTGCCGTGCGT 16 Query 725094 CTGATCATGCGCGG 725107 ||| | ||| ||| Sbjct 15 CTGCTGCTGCCCGG 2 >seq23144 Length=78198 Score = 107 bits (118), Expect = 3e-17 Identities = 163/229 (71%), Gaps = 10/229 (4%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATC--CTCCAACAAGTCCA 724971 ||||||||| | ||||||||||||||| || || |||| |||||| || ||| Sbjct 76885 TACAAGGTGTTGAAGCAGGTGCACCCCGACAC-----GGGCATCTTCTCCAA--AG-CCA 76936 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || || || ||||| | || || |||| |||| | | Sbjct 76937 TGGGCATCATGAACTCCTTCGTTAATGACATCTTTGAGCGTATCGCTGGCGAGACATCCC 76996 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | | |||||||||| ||| ||| | || ||||||||||| || || | Sbjct 76997 GCCTGGCACCTTACAACAAGCGCTCCACTATCACGTCCCGGGAGATCCAGACGGCTGTAC 77056 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| | ||| || || ||||||| |||||| || || || || || Sbjct 77057 GCCTGCTGCTGCCTGGGGAGCTGGCCAAGCACGCAGTGTCTGAAGGTAC 77105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7174341441579788