Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq7240 125 6e-24 seq22615 120 3e-22 seq22597 109 5e-19 seq6982 84.2 2e-11 >seq7240 Length=45712 Score = 125 bits (138), Expect = 6e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | |||||||||| | || ||||||||||| || ||||| Sbjct 6194 TCTTTCTGGATGTTGTAGTCAGACAAGGTTCGCCCATCTTCCAGCTGCTTTCCGGCAAAG 6135 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGT 35664 ||||| | ||||||||| | |||| || ||||||||| ||| ||| | ||| | | | Sbjct 6134 ATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC-TGAATTTTGGCCTTGACATT 6076 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||||| || | ||||| || || || ||||| || ||||| Sbjct 6075 CTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCAC 6016 Query 35725 AAATATCTGCATT 35737 ||| ||||||||| Sbjct 6015 AAAGATCTGCATT 6003 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 7266 TCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAG 7207 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGT 35664 ||||| | ||||||||| | |||| || || |||| | ||| ||| | ||| | | | Sbjct 7206 ATCAATCTCTGCTGGTCTGGGGGAATGCCTTCTTTGT-CTTGAATTTTGGCCTTGACATT 7148 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||||| || | ||||| |||||||| ||||| |||||||| Sbjct 7147 CTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTTTTACCGGTCAAGGTTTTCAC 7088 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 7087 AAAGATCTGCAT 7076 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | ||| ||||| || |||||||| || | || ||| || | || ||| Sbjct 6440 ACCAAGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 6381 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| || ||||| || || | |||||| || | || | || || || ||| | Sbjct 6380 AGCTGCTTTCCAGCAAAAATTAATCTCTGCTGATCTGGGGGGATGCCTTCTTTATCCTGG 6321 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 |||||| ||| | | | | | ||||| || | || || || | ||||| || || Sbjct 6320 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATGGTCTTG 6261 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| || ||||| || |||||||| Sbjct 6260 CCGGTCAAGGTCTTCACGAAAATCTGCAT 6232 >seq22615 Length=203576 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 193060 TCCTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAG 193001 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| | |||||| || | || | || || || ||| ||||||| ||| | | | Sbjct 193000 ATCAATCTCTGCTGATCTGGGGGGATGCCTTCTTTATCCTGGATCTTTGCCTTGACATTC 192941 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | ||||| || | ||||| |||||||| ||||| || |||||| Sbjct 192940 TCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTTTTACCAGTCAAGGTCTTCACA 192881 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 192880 AAGATCTGCAT 192870 >seq22597 Length=1249212 Score = 109 bits (120), Expect = 5e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | || ||| || |||| ||||||||||| || ||||| Sbjct 1181514 TCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCGTCTTCCAGCTGCTTGCCTGCAAAG 1181455 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || ||||||||| | ||| | || ||| ||||| ||| || || | | | Sbjct 1181454 ATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTGTCTTGGATTTTGGTTTTGACATTC 1181395 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || || | |||||||||| ||||| || || || |||| ||||||||| Sbjct 1181394 TCAATAGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCTGTCAGGGTTTTCACA 1181335 Query 35726 AATATCTGCATTCTG 35740 || ||||||||| || Sbjct 1181334 AAGATCTGCATTGTG 1181320 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 1181742 TCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTGCCTGCAAAG 1181683 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 || | || ||||||||| | ||| | || ||| ||||| ||| ||| || || | | | Sbjct 1181682 ATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTGTCTTGGAT-TTTGGCTTTGACATT 1181624 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | ||||| |||| ||||| || || ||||||| || ||||| Sbjct 1181623 CTCAATAGTATCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 1181564 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 1181563 AAAGATCTGCAT 1181552 Score = 98.7 bits (108), Expect = 9e-16 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 35580 CGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCT 35639 |||| ||||||||||| || ||||| || | || ||||||||| | ||| | || ||| | Sbjct 1181936 CGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTT 1181877 Query 35640 TGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTG 35698 |||| ||| ||| || || | | | | | ||||| || | |||||||||| ||| Sbjct 1181876 TGTCTTGGAT-TTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTG 1181818 Query 35699 ATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| || |||| || |||||||| |||||||| Sbjct 1181817 ATGGTTTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1181780 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 1182795 TCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTGCCTGCAAAG 1182736 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 || | || ||||||||| | ||| | || || ||||| ||| ||| || || | | | Sbjct 1182735 ATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCTTGGAT-TTTGGCTTTGACATT 1182677 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | ||||| || | ||||| || || ||||||| || ||||| Sbjct 1182676 CTCAATAGTATCACTGGGCTCCACTTCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 1182617 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 1182616 AAAGATCTGCAT 1182605 >seq6982 Length=3457922 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/189 (71%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | || ||| | | | || |||||||| || || ||| || Sbjct 878039 TCTTTCTGGATGTTGTAGTCAGACAGGGTACACCCATCTTCCAGCTGGTTTCCAGCACAT 878098 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 ||| | ||||||||| |||| || || || || ||| ||| || || | | | Sbjct 878099 --CAATCTCTGCTGGTCTAGGGGAATGCCTTCTTTATCT-TGAATTTTGGCCTTGACATT 878155 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | |||||| || | ||||| |||||||| ||||| |||||||| Sbjct 878156 CTCAATGGTATCACTGGGTTCCACTTCAAGGGTGATGGTTTTACCGGTCAAGGTTTTCAC 878215 Query 35725 AAATATCTG 35733 ||| ||||| Sbjct 878216 AAAGATCTG 878224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450590889387920