Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17]
35,974 sequences; 3,174,693,010 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq30399 172 8e-38
seq571 147 3e-30
seq15323 125 1e-23
seq6963 123 3e-23
>seq30399
Length=2248691
Score = 172 bits (190), Expect = 8e-38
Identities = 886/1387 (64%), Gaps = 72/1387 (5%)
Strand=Plus/Plus
Query 68358 TTTATCCTTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTA 68417
||| ||||| | || | ||||||||| || || | || | | |||| | | ||| ||
Sbjct 1676630 TTTTTCCTTCTTCAGAGAGAACTGAATGAGTTAGAA-GCTGATCTTGTCCTCAAATAATA 1676688
Query 68418 CATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATA 68477
||| || | |||||| | ||| || ||||| || || || || | ||| ||
Sbjct 1676689 CATTCCAGGATTCAGATTCTGCGTCCTACCATAGAAGTGGATGCTGGTAATTTTCCTTTA 1676748
Query 68478 ACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAA-AGCTCCTCTAT 68536
| | || || || || || ||||||| || ||||| ||||| ||||| | | ||| |||
Sbjct 1676749 AGTGGGCTCAGCAATGTGGATATTCAAAGACTGACTCTGATCAATGAATATCCCCT-TAT 1676807
Query 68537 CTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTT 68596
| ||| |||| | || | | || || | |||||| | | | ||||| | | || |
Sbjct 1676808 CAGCCACCATACTGG-AACAGTTTTGTGTGCCATTTCCAACACAATCTTATACAACTCAT 1676866
Query 68597 TGATATCATCTGGAAGGCTCGT---ATTTTGAATGGATCCACCATCGGATATAATTATAT 68653
| | ||| || |||| || || ||||| || || || || |||||| |
Sbjct 1676867 TCAGATCTTCAGGAATTTCAGTGATATACTGAATAGAGACATCAC---ATGCAATTATCT 1676923
Query 68654 --TCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATT 68711
| || ||||| |||||||| | | ||| || | | || || | ||
Sbjct 1676924 GGTTTTTATCTCTTCATTCCATAGGCCTTGCTCTGTCAGATCTTCCAGCAAGTG------ 1676977
Query 68712 AACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTC 68771
|| ||| || | | ||||| ||||||||||||| ||||| || |||||
Sbjct 1676978 ---------AACTTCTCCCAACAGGACTCTCTGAGTGTAAATATTGCTGGTGTAAGGTTC 1677028
Query 68772 CACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAA 68831
|| | |||||| || | ||| ||| | ||| ||||||| || || | ||
Sbjct 1677029 TGTGGACTGATTATTCCCTAAAATCTGAA------AGGCAATTGGCATTGGGGCAAACAG 1677082
Query 68832 TAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAG 68891
||||| ||||| | |||| | || || | || | ||| |||||||| ||| ||
Sbjct 1677083 CAAACTGTTTCTGATGCCAT-TATTTTGCAATATTCGTG-AGAATTTTCCAATTCCACAG 1677140
Query 68892 ATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCC 68951
|| || |||| ||| | ||| ||||| |||||| | || | | || ||
Sbjct 1677141 TTCTATAGGAGTGACATCCCACATATCATATTGAAGAATTTCTTTGCAAACTGGAGAGCC 1677200
Query 68952 ATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACC 69011
| |||||||||||| || || | || || || | ||||| || |||| | ||||
Sbjct 1677201 TTCATATGTTTCATATGGGCCATGCTCTTTGGCCAAATCACAGCTGCCCTCCTAGTCACC 1677260
Query 69012 GTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGG 69071
||||||| ||||| || |||| ||||| || ||| || ||| || | || || ||
Sbjct 1677261 ACAATAAATGGTTTCAAAGATCTGTTTATTTAGCAATTGGGCCTCTGGAGTGTCAAAAGG 1677320
Query 69072 ATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATG 69131
||| | | || ||||| ||||| || ||| | | |||||| || || |||
Sbjct 1677321 ATACTTCATCAGGATAAA-GCATCAGCTTGATTCTGCTCTCTAATACCAATGGGGTGATG 1677379
Query 69132 TCTCTTATTTG---AACTTTCAGCTTCT-GGAATAGGATAATAATTAATATCTATAATTT 69187
| ||||||| ||||| || ||| || || | |||| | | || || |||||||
Sbjct 1677380 ACATTTATTTGACAAACTT---GCCTCTAGGGCTA-GTTAAT-AGTGATGTCAATAATTT 1677434
Query 69188 TATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAA---AT-CAAAT 69243
|||| | || | || | ||||| | || ||||| | || || | ||
Sbjct 1677435 TATTTAAGTTGTGTACAATGACTTTGGTACCTTCAGCCAGTTTCTGGAAGCCATATATAT 1677494
Query 69244 CGTCCATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCA 69303
|||| | || ||||||||| |||| | | ||| | | ||||| ||||| ||||||
Sbjct 1677495 GCTCCAAC-ATGACAAACATAATCAGGACCAAAGAAGACAAGTTACAGACTGCAACCTCA 1677553
Query 69304 TTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGA 69363
| | | ||| | |||||| ||||| |||| ||| || | |||||| | | ||
Sbjct 1677554 TCTTTTCTAGTATACTCTATTATTTCTGTGCATAAATTGCTGCCTTTGATGGCCTCCTAG 1677613
Query 69364 TTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTT 69423
||||||||||| || || |||||| ||| ||||| | |||| | ||| | || ||
Sbjct 1677614 TTTTGCTGATTGCTTTTCCAATTACAGCTGTCTTTGTAGAAAATATAAGGAATCCCTGTC 1677673
Query 69424 TCAATCTGAGATTCGATAATAG-ATTTCCAAACGACCCTAG--CATTTATTACGGTCTTG 69480
|| |||| || || || |||| || | | || || ||| || |||| | | ||
Sbjct 1677674 TCTGTCTGGGACTCAATGATAGCATATTC-AATGA---TAGCCCACCTATTGGGCTTTTA 1677729
Query 69481 TAACGCTTC--------TC-TTTTTCATATTGTGTATATAGCCGT-TCGAATTCATCTCC 69530
||| | | || |||||| || | || | | | || |||| |||||
Sbjct 1677730 CAACCTTACAGACATGATCTTTTTTCTCATAACTTTCATTGACATCTCAAATTTTTCTCC 1677789
Query 69531 CCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATC 69590
||||| ||| || |||| || ||||| |||||||||| || || | | || ||
Sbjct 1677790 CCAAA---CATTCAGACCAGATCACTCATTAGGACACATCAGGGAGCAGTCCTGATTATT 1677846
Query 69591 CTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTC 69649
| | |||| || || |||| || |||||||| | || | || | |||||||| |
Sbjct 1677847 TTCCAAATGTTTGATGAAGAGATTTGGGATCCAAAG-GATAAAGAAAATATCTCTGGCTT 1677905
Query 69650 TATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCC 69709
| ||||| ||||| | ||||| || | ||| || || || | || || | |||
Sbjct 1677906 ACTGCTCTTCCTTTCCAATGTTTTTCTTTAAATCAAGGAATTCAAAGATGTCTAAGAGCC 1677965
Query 69710 ATGGTTC 69716
| |||||
Sbjct 1677966 AGGGTTC 1677972
Score = 114 bits (126), Expect = 2e-20
Identities = 216/316 (68%), Gaps = 4/316 (1%)
Strand=Plus/Plus
Query 70299 AGGATTAACATAGTTGAATAAA--TCTTCCATTACATCACTAAATAGtttttttGTTTCC 70356
|||||| | ||||| ||||| || ||||| |||||||| || | ||| |||| |||
Sbjct 1678637 AGGATTTATTTAGTT--ATAAAGGTCCTCCATCACATCACTGAACACTTTCTTTGCTTCT 1678694
Query 70357 TTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTA 70416
|| || ||||| | | ||||||||||||| ||| ||||| || || | || ||
Sbjct 1678695 TTATGCAAATTATAAACAATAATTCTGGCTGCTAAAATGGCATAATCTGGGTCTTTGGTG 1678754
Query 70417 GTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAACTCCGTTA 70476
|| || || | | |||| | || || ||||||||||| || || || || ||
Sbjct 1678755 GTCAGGGTTGCAGTTGTTTCAACTGCCAAGGTATCTAATTCCCCTGTGGTCACCCCACTA 1678814
Query 70477 TATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTATGAATTCTGTGTTCAGA 70536
||| ||||| |||| ||||||| |||| | | |||| | ||||| |||| ||
Sbjct 1678815 TATTATCCTTGGATAAGTTTCATGATGATTTGAACATGATCAACAAATTCCATGTTGAGT 1678874
Query 70537 CCATAACATAATTTTCTAATACGAGATGTAATTTTATCAAACATAACATTCTCCTTATTT 70596
| ||| | | ||| || | ||| ||||| || |||||||| || | |||| |
Sbjct 1678875 CTATAGTAGAGTTTCTGTATCCTAGAAGTAATATTGTCAAACATGACCTCATCCTGGTGG 1678934
Query 70597 CCACTTCGTTTAATGA 70612
||| || ||||||||
Sbjct 1678935 CCATCTCATTTAATGA 1678950
>seq571
Length=175726
Score = 147 bits (162), Expect = 3e-30
Identities = 108/126 (86%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||||||||||| ||| |||||||| || | ||||||||||| ||| || || |
Sbjct 169064 CCTCATCTCTACTAATTAGTTCATTAGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 169005
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
||||||| ||||||| |||||||| |||||||||||||| ||||| || |||||||| |
Sbjct 169004 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 168945
Query 39759 CAACAA 39764
| ||||
Sbjct 168944 CTACAA 168939
Score = 102 bits (112), Expect = 1e-16
Identities = 80/96 (83%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369
|||||| ||||||||| | |||||||| || || | ||||| || || |||||||| ||
Sbjct 172703 TGACATCACTCCCATTCTCTGGTATTCTCCTACTCTCTTCTCAAAGAAGTTAGTTTTTCC 172644
Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATT 39405
||||||||| ||||| ||||| |||||||| |||||
Sbjct 172643 TTCCAATGAGATATTCTCCATAAAATCAAATGGATT 172608
>seq15323
Length=1134477
Score = 125 bits (138), Expect = 1e-23
Identities = 132/174 (76%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393
|||| || | |||||||||||| ||||| ||||| || | || || |||||||||| ||
Sbjct 882221 CACTGAACACTTTTTTTGTTTCTTTGTGCAAATTAGAAACAGCAATCCTGGCTGCTAAAA 882162
Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453
||||||| || ||||||| || || | || || | | |||| ||||| | || ||||
Sbjct 882161 TAGCATAATCTGGATGTTTGGTGGTCAAGGTTGCAGATGTTTCAGCAGCCAGGGTGTCTA 882102
Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTT 70507
| || | || || ||||| | |||| ||||| ||||||||||||| |||||
Sbjct 882101 ACTCCACTGTGGTCACTCCACTGTATAATCCTTGGATAACTTTCATGGTTATTT 882048
Score = 105 bits (116), Expect = 9e-18
Identities = 103/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
|||||||| || || | ||||| ||||| |||||||| ||||| || ||||| | ||
Sbjct 902708 TGAAATTCTCCTGACAGGACTCTCCGAGTATAAATATTGCTGGTGTAAGGTTCAATGGAC 902649
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838
|||||||| || | ||| |||||||| || ||||||||||| || || | || |||||
Sbjct 902648 TCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGCAAACTG 902589
Query 68839 TTTCTAAGACCAT 68851
||||| | ||||
Sbjct 902588 TTTCTGATGCCAT 902576
Score = 89.7 bits (98), Expect = 7e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006
|| || | |||||||||||| || || | || | || | ||||| || || || ||
Sbjct 895832 GACCCTTCATATGTTTCATATGGGCCATACTCCTTGGCCAAGTCACAGCTGGCTTCCAAG 895773
Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066
||||| |||||||| ||||| || |||| ||||| | || || ||| |||| ||
Sbjct 895772 GCACCATAATAAATGGTTTCAAAGATCTGTTTATTCAACAACTGGGCCTCTGGACTCTCA 895713
Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126
|| ||||| | || ||||| ||||| || | || || || || ||||| |||||
Sbjct 895712 AAAGGATATCTCATCAGGATAAAAGCATCAGCTAGACCTTGCACTCCGATACCAATAGGG 895653
Query 69127 CTATGTCTCTTATTTGA 69143
| ||| | ||||||||
Sbjct 895652 CGATGACGTTTATTTGA 895636
>seq6963
Length=4024090
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| || || | ||| || ||||| |||||||||||||| ||||| | ||| |
Sbjct 2874076 CCTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 2874135
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| ||||||||||| |||||||| || || || ||||| || |||||||| || || || |
Sbjct 2874136 TAAGCCAAAATATAGCAGCAAACGAACCCGAGAAGAAAATCCCTTCTACAGCAGCGAAAG 2874195
Query 39759 CAACAAGTCTCTCTCC 39774
| || | ||| |||||
Sbjct 2874196 CGACCACTCTTTCTCC 2874211
Score = 96.9 bits (106), Expect = 5e-15
Identities = 92/118 (78%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058
||||||||||||| |||||||||||||| || |||||||| ||||| | || || |
Sbjct 2880227 CCAAATTTTCATTGACTATTCCATCACTGGCTGCAAAAAAAGCCAAGATGTGAGAGATGA 2880286
Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTAC 40116
||||||| ||||| | | ||| ||| ||||| | | | ||||||||||| ||| ||
Sbjct 2880287 AATATTTCTCATCTGATTTCAGTTTGTTCCAATGAGGAAGATCTTTTGATAAATCAAC 2880344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686599914285360
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