Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq30399 172 8e-38 seq571 147 3e-30 seq15323 125 1e-23 seq6963 123 3e-23 >seq30399 Length=2248691 Score = 172 bits (190), Expect = 8e-38 Identities = 886/1387 (64%), Gaps = 72/1387 (5%) Strand=Plus/Plus Query 68358 TTTATCCTTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTA 68417 ||| ||||| | || | ||||||||| || || | || | | |||| | | ||| || Sbjct 1676630 TTTTTCCTTCTTCAGAGAGAACTGAATGAGTTAGAA-GCTGATCTTGTCCTCAAATAATA 1676688 Query 68418 CATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATA 68477 ||| || | |||||| | ||| || ||||| || || || || | ||| || Sbjct 1676689 CATTCCAGGATTCAGATTCTGCGTCCTACCATAGAAGTGGATGCTGGTAATTTTCCTTTA 1676748 Query 68478 ACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAA-AGCTCCTCTAT 68536 | | || || || || || ||||||| || ||||| ||||| ||||| | | ||| ||| Sbjct 1676749 AGTGGGCTCAGCAATGTGGATATTCAAAGACTGACTCTGATCAATGAATATCCCCT-TAT 1676807 Query 68537 CTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTT 68596 | ||| |||| | || | | || || | |||||| | | | ||||| | | || | Sbjct 1676808 CAGCCACCATACTGG-AACAGTTTTGTGTGCCATTTCCAACACAATCTTATACAACTCAT 1676866 Query 68597 TGATATCATCTGGAAGGCTCGT---ATTTTGAATGGATCCACCATCGGATATAATTATAT 68653 | | ||| || |||| || || ||||| || || || || |||||| | Sbjct 1676867 TCAGATCTTCAGGAATTTCAGTGATATACTGAATAGAGACATCAC---ATGCAATTATCT 1676923 Query 68654 --TCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATT 68711 | || ||||| |||||||| | | ||| || | | || || | || Sbjct 1676924 GGTTTTTATCTCTTCATTCCATAGGCCTTGCTCTGTCAGATCTTCCAGCAAGTG------ 1676977 Query 68712 AACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTC 68771 || ||| || | | ||||| ||||||||||||| ||||| || ||||| Sbjct 1676978 ---------AACTTCTCCCAACAGGACTCTCTGAGTGTAAATATTGCTGGTGTAAGGTTC 1677028 Query 68772 CACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAA 68831 || | |||||| || | ||| ||| | ||| ||||||| || || | || Sbjct 1677029 TGTGGACTGATTATTCCCTAAAATCTGAA------AGGCAATTGGCATTGGGGCAAACAG 1677082 Query 68832 TAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAG 68891 ||||| ||||| | |||| | || || | || | ||| |||||||| ||| || Sbjct 1677083 CAAACTGTTTCTGATGCCAT-TATTTTGCAATATTCGTG-AGAATTTTCCAATTCCACAG 1677140 Query 68892 ATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCC 68951 || || |||| ||| | ||| ||||| |||||| | || | | || || Sbjct 1677141 TTCTATAGGAGTGACATCCCACATATCATATTGAAGAATTTCTTTGCAAACTGGAGAGCC 1677200 Query 68952 ATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACC 69011 | |||||||||||| || || | || || || | ||||| || |||| | |||| Sbjct 1677201 TTCATATGTTTCATATGGGCCATGCTCTTTGGCCAAATCACAGCTGCCCTCCTAGTCACC 1677260 Query 69012 GTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGG 69071 ||||||| ||||| || |||| ||||| || ||| || ||| || | || || || Sbjct 1677261 ACAATAAATGGTTTCAAAGATCTGTTTATTTAGCAATTGGGCCTCTGGAGTGTCAAAAGG 1677320 Query 69072 ATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATG 69131 ||| | | || ||||| ||||| || ||| | | |||||| || || ||| Sbjct 1677321 ATACTTCATCAGGATAAA-GCATCAGCTTGATTCTGCTCTCTAATACCAATGGGGTGATG 1677379 Query 69132 TCTCTTATTTG---AACTTTCAGCTTCT-GGAATAGGATAATAATTAATATCTATAATTT 69187 | ||||||| ||||| || ||| || || | |||| | | || || ||||||| Sbjct 1677380 ACATTTATTTGACAAACTT---GCCTCTAGGGCTA-GTTAAT-AGTGATGTCAATAATTT 1677434 Query 69188 TATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAA---AT-CAAAT 69243 |||| | || | || | ||||| | || ||||| | || || | || Sbjct 1677435 TATTTAAGTTGTGTACAATGACTTTGGTACCTTCAGCCAGTTTCTGGAAGCCATATATAT 1677494 Query 69244 CGTCCATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCA 69303 |||| | || ||||||||| |||| | | ||| | | ||||| ||||| |||||| Sbjct 1677495 GCTCCAAC-ATGACAAACATAATCAGGACCAAAGAAGACAAGTTACAGACTGCAACCTCA 1677553 Query 69304 TTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGA 69363 | | | ||| | |||||| ||||| |||| ||| || | |||||| | | || Sbjct 1677554 TCTTTTCTAGTATACTCTATTATTTCTGTGCATAAATTGCTGCCTTTGATGGCCTCCTAG 1677613 Query 69364 TTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTT 69423 ||||||||||| || || |||||| ||| ||||| | |||| | ||| | || || Sbjct 1677614 TTTTGCTGATTGCTTTTCCAATTACAGCTGTCTTTGTAGAAAATATAAGGAATCCCTGTC 1677673 Query 69424 TCAATCTGAGATTCGATAATAG-ATTTCCAAACGACCCTAG--CATTTATTACGGTCTTG 69480 || |||| || || || |||| || | | || || ||| || |||| | | || Sbjct 1677674 TCTGTCTGGGACTCAATGATAGCATATTC-AATGA---TAGCCCACCTATTGGGCTTTTA 1677729 Query 69481 TAACGCTTC--------TC-TTTTTCATATTGTGTATATAGCCGT-TCGAATTCATCTCC 69530 ||| | | || |||||| || | || | | | || |||| ||||| Sbjct 1677730 CAACCTTACAGACATGATCTTTTTTCTCATAACTTTCATTGACATCTCAAATTTTTCTCC 1677789 Query 69531 CCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATC 69590 ||||| ||| || |||| || ||||| |||||||||| || || | | || || Sbjct 1677790 CCAAA---CATTCAGACCAGATCACTCATTAGGACACATCAGGGAGCAGTCCTGATTATT 1677846 Query 69591 CTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTC 69649 | | |||| || || |||| || |||||||| | || | || | |||||||| | Sbjct 1677847 TTCCAAATGTTTGATGAAGAGATTTGGGATCCAAAG-GATAAAGAAAATATCTCTGGCTT 1677905 Query 69650 TATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCC 69709 | ||||| ||||| | ||||| || | ||| || || || | || || | ||| Sbjct 1677906 ACTGCTCTTCCTTTCCAATGTTTTTCTTTAAATCAAGGAATTCAAAGATGTCTAAGAGCC 1677965 Query 69710 ATGGTTC 69716 | ||||| Sbjct 1677966 AGGGTTC 1677972 Score = 114 bits (126), Expect = 2e-20 Identities = 216/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 70299 AGGATTAACATAGTTGAATAAA--TCTTCCATTACATCACTAAATAGtttttttGTTTCC 70356 |||||| | ||||| ||||| || ||||| |||||||| || | ||| |||| ||| Sbjct 1678637 AGGATTTATTTAGTT--ATAAAGGTCCTCCATCACATCACTGAACACTTTCTTTGCTTCT 1678694 Query 70357 TTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTA 70416 || || ||||| | | ||||||||||||| ||| ||||| || || | || || Sbjct 1678695 TTATGCAAATTATAAACAATAATTCTGGCTGCTAAAATGGCATAATCTGGGTCTTTGGTG 1678754 Query 70417 GTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAACTCCGTTA 70476 || || || | | |||| | || || ||||||||||| || || || || || Sbjct 1678755 GTCAGGGTTGCAGTTGTTTCAACTGCCAAGGTATCTAATTCCCCTGTGGTCACCCCACTA 1678814 Query 70477 TATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTATGAATTCTGTGTTCAGA 70536 ||| ||||| |||| ||||||| |||| | | |||| | ||||| |||| || Sbjct 1678815 TATTATCCTTGGATAAGTTTCATGATGATTTGAACATGATCAACAAATTCCATGTTGAGT 1678874 Query 70537 CCATAACATAATTTTCTAATACGAGATGTAATTTTATCAAACATAACATTCTCCTTATTT 70596 | ||| | | ||| || | ||| ||||| || |||||||| || | |||| | Sbjct 1678875 CTATAGTAGAGTTTCTGTATCCTAGAAGTAATATTGTCAAACATGACCTCATCCTGGTGG 1678934 Query 70597 CCACTTCGTTTAATGA 70612 ||| || |||||||| Sbjct 1678935 CCATCTCATTTAATGA 1678950 >seq571 Length=175726 Score = 147 bits (162), Expect = 3e-30 Identities = 108/126 (86%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||||||||||| ||| |||||||| || | ||||||||||| ||| || || | Sbjct 169064 CCTCATCTCTACTAATTAGTTCATTAGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 169005 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||||| |||||||| |||||||||||||| ||||| || |||||||| | Sbjct 169004 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 168945 Query 39759 CAACAA 39764 | |||| Sbjct 168944 CTACAA 168939 Score = 102 bits (112), Expect = 1e-16 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369 |||||| ||||||||| | |||||||| || || | ||||| || || |||||||| || Sbjct 172703 TGACATCACTCCCATTCTCTGGTATTCTCCTACTCTCTTCTCAAAGAAGTTAGTTTTTCC 172644 Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATT 39405 ||||||||| ||||| ||||| |||||||| ||||| Sbjct 172643 TTCCAATGAGATATTCTCCATAAAATCAAATGGATT 172608 >seq15323 Length=1134477 Score = 125 bits (138), Expect = 1e-23 Identities = 132/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | |||||||||||| ||||| ||||| || | || || |||||||||| || Sbjct 882221 CACTGAACACTTTTTTTGTTTCTTTGTGCAAATTAGAAACAGCAATCCTGGCTGCTAAAA 882162 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 ||||||| || ||||||| || || | || || | | |||| ||||| | || |||| Sbjct 882161 TAGCATAATCTGGATGTTTGGTGGTCAAGGTTGCAGATGTTTCAGCAGCCAGGGTGTCTA 882102 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTT 70507 | || | || || ||||| | |||| ||||| ||||||||||||| ||||| Sbjct 882101 ACTCCACTGTGGTCACTCCACTGTATAATCCTTGGATAACTTTCATGGTTATTT 882048 Score = 105 bits (116), Expect = 9e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || | ||||| ||||| |||||||| ||||| || ||||| | || Sbjct 902708 TGAAATTCTCCTGACAGGACTCTCCGAGTATAAATATTGCTGGTGTAAGGTTCAATGGAC 902649 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| || | ||| |||||||| || ||||||||||| || || | || ||||| Sbjct 902648 TCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGCAAACTG 902589 Query 68839 TTTCTAAGACCAT 68851 ||||| | |||| Sbjct 902588 TTTCTGATGCCAT 902576 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 || || | |||||||||||| || || | || | || | ||||| || || || || Sbjct 895832 GACCCTTCATATGTTTCATATGGGCCATACTCCTTGGCCAAGTCACAGCTGGCTTCCAAG 895773 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 ||||| |||||||| ||||| || |||| ||||| | || || ||| |||| || Sbjct 895772 GCACCATAATAAATGGTTTCAAAGATCTGTTTATTCAACAACTGGGCCTCTGGACTCTCA 895713 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 || ||||| | || ||||| ||||| || | || || || || ||||| ||||| Sbjct 895712 AAAGGATATCTCATCAGGATAAAAGCATCAGCTAGACCTTGCACTCCGATACCAATAGGG 895653 Query 69127 CTATGTCTCTTATTTGA 69143 | ||| | |||||||| Sbjct 895652 CGATGACGTTTATTTGA 895636 >seq6963 Length=4024090 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| || ||||| |||||||||||||| ||||| | ||| | Sbjct 2874076 CCTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 2874135 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| |||||||| || || || ||||| || |||||||| || || || | Sbjct 2874136 TAAGCCAAAATATAGCAGCAAACGAACCCGAGAAGAAAATCCCTTCTACAGCAGCGAAAG 2874195 Query 39759 CAACAAGTCTCTCTCC 39774 | || | ||| ||||| Sbjct 2874196 CGACCACTCTTTCTCC 2874211 Score = 96.9 bits (106), Expect = 5e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 ||||||||||||| |||||||||||||| || |||||||| ||||| | || || | Sbjct 2880227 CCAAATTTTCATTGACTATTCCATCACTGGCTGCAAAAAAAGCCAAGATGTGAGAGATGA 2880286 Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTAC 40116 ||||||| ||||| | | ||| ||| ||||| | | | ||||||||||| ||| || Sbjct 2880287 AATATTTCTCATCTGATTTCAGTTTGTTCCAATGAGGAAGATCTTTTGATAAATCAAC 2880344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686599914285360