Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq571 120 2e-22 seq7675 113 4e-20 seq6894 113 4e-20 seq22419 109 4e-19 seq7140 96.9 3e-15 seq6963 95.1 1e-14 >seq571 Length=175726 Score = 120 bits (132), Expect = 2e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||||| |||| || ||||||| ||| ||||| || |||||||| || || ||||| Sbjct 168929 GGTGAACGTGTTGTAGCTTTTGCAGCTGTTGAAGGAATCTTCTTTTCTGGTTCTTTTGCA 168988 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 ||||||| ||| | |||||||||||||| |||||||| || || ||||| ||||| || Sbjct 168989 TCCATATTCTGGCTCAAGAAACGAGGTTTAATGCCTGGATTAACTTTTTCTAATGAACTA 169048 Query 44243 ATAAGTCGTGATGA 44256 || ||| | ||||| Sbjct 169049 ATTAGTAGAGATGA 169062 Score = 104 bits (114), Expect = 2e-17 Identities = 119/157 (76%), Gaps = 5/157 (3%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||||||||| ||||| || |||||||| ||||| ||||| ||||| | Sbjct 172606 AAAATCCATTTGATTTTATGGAGAATATCTCATTGGAAGGAAAAACTAACTTCTTTGAGA 172665 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAA---CAAGTGACAATAAATTTA 44609 | | || |||||||| ||| ||||||| || ||| || ||| || ||| |||| Sbjct 172666 AGAGAGTAGGAGAATACCAGAGAATGGGAGTGATGTCAAGTTCAACTGGGAATTCTTTTA 172725 Query 44610 CTACGGATGAAGATTTCTA-ATTAATCAGAAAACTTG 44645 | ||||| ||| ||||| || ||| |||||| || Sbjct 172726 CCTTGGATGCAGACTTCTAGATGAAT-TGAAAACATG 172761 >seq7675 Length=222078 Score = 113 bits (124), Expect = 4e-20 Identities = 276/416 (66%), Gaps = 13/416 (3%) Strand=Plus/Plus Query 40857 AGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAA 40916 ||||| ||||| ||| | || || || ||||| || |||| | |||||||||| || || Sbjct 43095 AGGGAGGAAGGAGATTTGGGGCCAGTGTATGGCTTCCAGTAGAGACATTTTGGGTCAGAA 43154 Query 40917 TATGACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATA 40976 ||| | ||| || | |||||| ||| || |||| |||||| |||| | || Sbjct 43155 TATAAAGAAATGAACACAGATTATTCCAGGCAAAGAATAGATCAACTACAAAAATTAATT 43214 Query 40977 GATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAA------- 41029 || || || ||| || | || ||| || | || || ||| || | ||| Sbjct 43215 GACACAATCAAAACCAACCCTGATGAAAGAAGGATCAT---GTGTGCTTAGAATTCTAAA 43271 Query 41030 -CCCAACGGACG-TACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTAC 41087 || || ||| | | | |||||||| | || | ||||| | ||| |||| | Sbjct 43272 TCCTAAAGGAATCTTCCTCTGATGGCACTTCCTCTGTGTCACACTCTCTGTTAGTTCTTT 43331 Query 41088 GTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGG 41147 || | ||||| | || || ||| | || ||||||||||| || || ||| || || Sbjct 43332 GTATTAAATGGCAAGCTCTCTTGTTAGTTATATCAAAGATCTGGAGATGAGGGTCTCAGG 43391 Query 41148 GTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAAT 41207 | | ||| ||||| || |||||| | |||||||| || ||||| || || || | Sbjct 43392 ATGCTGTTCAACATTGCCAGTTATTCCCTGCTCACCTACATGATGGCCCAAGTCAAAGGC 43451 Query 41208 TTAAAACCTGGTGAATTTGTTCACACGT-TAGGAGATGGACATATTTACATTAATC 41262 |||| || ||||||||||| || | | | |||||| ||||| ||| | |||| Sbjct 43452 CTAAAGCCAGGTGAATTTGTACATAATTCTGGGAGATACTCATATATACCTGAATC 43507 >seq6894 Length=939852 Score = 113 bits (124), Expect = 4e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||||||||| || ||||| | |||||||| || | ||||| || || | Sbjct 59273 TGATGGCATTGCCTCCATGTCACGCTCTCTGTCAGTTCTATATACTGAATGGCGAGCTCT 59332 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | ||||| || |||||| |||| || || ||||| || ||||| ||||| ||||| || | Sbjct 59333 CTTGTCAGTTATATCAACGATCTGGAGATATGGGCCTCGGGGTGCCGTTCAACATTGCCA 59392 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 ||||| | |||||||| || |||||||| || || || Sbjct 59393 GTTATTCCCTGCTCACCTACATGATTGCTCATGTCAC 59429 >seq22419 Length=3082338 Score = 109 bits (120), Expect = 4e-19 Identities = 123/162 (76%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| |||||| || || || | |||||| | || || ||||||||||| ||||| Sbjct 1769101 AACAGTGGTTTGCATATCATCATCTTTGATGAAATTGATGCCATCTGTAAGCAGAGAGGG 1769042 Query 19600 TC--TGG-TGTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||| || || | ||||| ||||||||||||||||| ||||| |||||||| | Sbjct 1769041 AGCATGGCTGGAAGTACAGGAGTTCATGACACTGTTGTCAACCAACTGTTGTCAAAAATT 1768982 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || ||||| | ||||||||||| || ||||| ||||| ||| Sbjct 1768981 GATGGTGTAGAGCAACTGAATAACATCTTAGTCATTGGTATG 1768940 >seq7140 Length=994715 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 77394 TCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGTCACACCATTGATGGTGAACATGC 77453 ||||||| || | |||||| | |||||||| | | | ||||| || || ||||| | Sbjct 416470 TCCAGCCATTTT-CTTCCAATCTTTAACCCAACTTTTTATGCCATTTATAGTAAACATAC 416528 Query 77454 TGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGG 77513 | ||| ||| || || ||||| |||| | | | || ||| ||| | |||||| Sbjct 416529 TATCTATGTTGAGAACTAGCTTACTGATGTGTTGATTCTTGGCTCGTTCAATTGCTTTAC 416588 Query 77514 ATGCAGCCTGGATTTCAGCGCGCTGGTTTGTCTGTTGCCCCACAAGTCGCTCTGCAACAT 77573 | ||| | || ||||| || | | ||||||||||||||| ||||| || | |||| Sbjct 416589 AGGCAACATGTATTTCTGCTCTTTAGTTTGTCTGTTGCCCAGGAAGTCTATCACCCACAT 416648 Query 77574 TAAGCGGGTGATTATAACC-CCAATATACGCCAATGCCAGCTCGGGCTT 77621 | || || || | || || |||||| || ||||| |||||||| |||| Sbjct 416649 TTAGAGGATG-TCCTAGCCTCCAATAAACACCAATACCAGCTCGTGCTT 416696 >seq6963 Length=4024090 Score = 95.1 bits (104), Expect = 1e-14 Identities = 104/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 || || |||||||| |||||||||||||| ||||||| |||||||| |||||||||||| Sbjct 2862679 AATCCCTTTGATTTCATGGAAAATATTTCTCTGGAAGGGAAAACAAATTTTTTTGAAAAA 2862620 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTACT 44611 | || |||||||||||| | | || ||| ||||| |||||| || || Sbjct 2862619 AGGGTCTCAGAATATCAGCGTTTTGCAGTTATGGCAGAAACAACAGACAATGTCTTCACC 2862560 Query 44612 ACGGATGAAGATTTCTAA 44629 ||||| |||||| ||| Sbjct 2862559 TTGGATGCAGATTTTTAA 2862542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397281742123870