Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq6894 122 7e-23 >seq6894 Length=939852 Score = 122 bits (134), Expect = 7e-23 Identities = 129/169 (76%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 111771 CTCCAAACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAA 111830 || || ||| |||| || ||||||||||| ||||| || ||||| |||||||| || Sbjct 59439 CTTCAGACCTGTGACATGAGCAATCATGTAGGTGAGCAGGGAATAACTGGCAATGTTGAA 59380 Query 111831 TGGCACACCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTT---TATT 111887 ||||| || |||||||||||||| |||| |||||||| |||||| || || | ||| Sbjct 59379 CGGCACCCCGAGGCCCATATCTCCAGATCGTTGATATAACTGACAAGAGAGCTCGCCATT 59320 Query 111888 TTGTGACACATAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 || | ||| || ||||| || | ||||| ||||||||||||||| Sbjct 59319 CAGT---ATATAGAACTGACAGAGAGCGTGACATGGAGGCAATGCCATC 59274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391773758065762