Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq22416 104 3e-17 seq6963 86.0 7e-12 >seq22416 Length=3480846 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | ||| || | ||||||||||| ||||| || |||||||| Sbjct 989220 GTGAAGATGTATCGAGGGCTAGCAGAGTCCTTGCCACCATGCAGCCTGGTACCAAACTGA 989161 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||| | | ||||||||| |||||| |||||| ||||| ||||||||||| | | Sbjct 989160 CCAATGGGTTGCAAGAGGTTGAGATTGTTGCTGCCCACAAAATTTTGAGCCAAATTAATA 989101 Query 152149 ATCGT 152153 || || Sbjct 989100 ATGGT 989096 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| ||| |||| |||||||||||| || | ||||| || || Sbjct 989220 GTGAAGATGTATCGAGGGCTAGCAGAGTCCTTGCCACCATGCAGCCTGGTACCAAACTGA 989161 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | ||||||||| || |||||| ||||||||| ||||||||||| || | | Sbjct 989160 CCAATGGGTTGCAAGAGGTTGAGATTGTTGCTGCCCACAAAATTTTGAGCCAAATTAATA 989101 Query 117425 ATCGT 117429 || || Sbjct 989100 ATGGT 989096 >seq6963 Length=4024090 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | || ||||||||||| || | |||||| Sbjct 2874078 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTA 2874137 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||||| || ||| || ||||| |||||| || ||||| ||| || || ||| Sbjct 2874138 AGCCAAAATATAGCAGCAAACGAACCCGAGAAGAAAATCCCTTCTACAGCAGCGAAAGCG 2874197 Query 74892 AC 74893 || Sbjct 2874198 AC 2874199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546969930645200