Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq7240 159 4e-34 seq22615 140 4e-28 seq118 122 1e-22 seq6888 120 3e-22 seq7502 86.0 7e-12 seq7009 84.2 2e-11 >seq7240 Length=45712 Score = 159 bits (176), Expect = 4e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| | || |||||||| || || ||||| || ||| | | Sbjct 6003 AATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAAGTGGAGCCCAG 6062 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||||| ||||||||||||||||| || ||||| |||||||| Sbjct 6063 TGACACCATTGAGAATGTCAAGGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGACCA 6122 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || ||||| || ||||| || || |||| || ||| | | ||||| || Sbjct 6123 GCAGAGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGAACCTTGTCTGACTACAA 6182 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || |||||||| || || | ||| | ||||| | ||||| Sbjct 6183 CATCCAGAAAGAATCCACCCTGCACTTGGTCCTTCGTCTCAGAGGTGG 6230 Score = 154 bits (170), Expect = 2e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || | ||||| || || || || ||||| || ||| | || Sbjct 7076 ATGCAGATCTTTGTGAAAACCTTGACCGGTAAAACCATCACCCTTGAAGTGGAGCCCAGT 7135 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| |||||||| ||||| || || ||||| ||||||||| Sbjct 7136 GACACCATTGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGCATTCCCCCAGACCAG 7195 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || |||||||| ||||| || || |||| |||||||| | ||||| || Sbjct 7196 CAGAGATTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 7255 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 |||| || |||||||| ||||| | ||| |||| Sbjct 7256 ATCCAGAAAGAATCCACCCTTCACTTGGTCCTGCG 7290 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| | ||||||||||| || || ||||| || ||| | || Sbjct 6232 ATGCAGATTTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTTGAAGTAGAGCCCAGT 6291 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || ||||| || || || || || ||||| ||| Sbjct 6292 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGATAAAGAAGGCATCCCCCCAGATCAG 6351 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | ||||||||||||| ||||| || || |||| ||| ||||| | ||||| || Sbjct 6352 CAGAGATTAATTTTTGCTGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 6411 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || || || | ||| | ||||| | ||||| Sbjct 6412 ATCCAGAAGGAATCTACCCTGCACTTGGTCCTTCGTCTCAGAGGTGG 6458 >seq22615 Length=203576 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || || || || || || ||||| || ||| | || Sbjct 192870 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACCCTTGAAGTGGAGCCCAGT 192929 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || ||||| || || || || || ||||| ||| Sbjct 192930 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGATAAAGAAGGCATCCCCCCAGATCAG 192989 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || |||||||| ||||| || || |||| |||||||| | ||||| || Sbjct 192990 CAGAGATTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 193049 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || || | ||| | ||||| | ||||| Sbjct 193050 ATCCAGAAGGAATCCACCCTGCACTTGGTCCTTCGTCTCAGAGGTGG 193096 Score = 131 bits (144), Expect = 2e-25 Identities = 146/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 27438 GACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCA 27497 || ||| || ||||| || || | |||||| ||||| |||| | ||||| || || || Sbjct 192674 GAATATCACCCTTGAAGTAGAACCCAGTGATACCATTGAAAATGTCAAGGCAAAGATCCA 192733 Query 27498 GGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGA 27557 ||| || || || || || |||||||||||| | | |||||||| || ||||| || || Sbjct 192734 GGATAAAGAAGGCATCCCCCCAGACCAGCAGAGATTGATTTTTGCCGGAAAGCAGCTGGA 192793 Query 27558 GGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 |||| ||| ||||| | ||||| || |||| || ||||| |||||||| ||||| | Sbjct 192794 AGATGGTCGCACCCTGTCTGACTACAACATCCAGAAAGAATCAACTCTTCACTTAGTCCT 192853 Query 27618 GCGTCTTCGCGGTGG 27632 ||||| | ||||| Sbjct 192854 TCGTCTCAGAGGTGG 192868 >seq118 Length=1243895 Score = 122 bits (134), Expect = 1e-22 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 || |||||| ||||||| ||||| || || || ||||| || || ||||| || || | Sbjct 314847 TACAATGCATTTCTTTGTGAAGAC-CTGACTGGTAAGACCATGACCCTTGAAGTGAAGCC 314905 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCC-AG 27520 |||| | ||||| ||| | |||| || || ||||| || || | || || || || Sbjct 314906 CAGTGACACCATTGAGAATGTCAAGGTGAAGATCCAGGATAAAGAAAGCATCCCCCCCAG 314965 Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTAAGC--AACTCGAGGATGATCGTACCCTAGCAGA 27578 | |||||| | ||||||||||||| |||| |||| || | || | |||||| | || Sbjct 314966 AGCAGCAGAGATTAATTTTTGCTGGAAAGCCCAACTGGAAGGTGGGCATACCCTGTCTGA 315025 Query 27579 CTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 ||| || |||| || |||||||||||||| ||||| || Sbjct 315026 CTACAACATCCAGAAAGAATCCACTCTTCACTTAGTCCTG 315065 >seq6888 Length=4066119 Score = 120 bits (132), Expect = 3e-22 Identities = 158/218 (72%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 ||||||||| ||||||| ||||| | || || ||||| || || |||| || || | Sbjct 2510589 TATAATGCATTTCTTTGTGAAGACTTTGACTGGTAAGACCATCACCCTTGGAGTGAAGCC 2510530 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTC-CAG 27520 |||||| ||||| ||| | |||| || || ||||| || || || || || | ||| Sbjct 2510529 CAGTGATACCATTGAGAATGTCAAGGTGAAGATCCAGGATAAAGAAGGCATCCCCCTCAG 2510470 Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT 27580 | | |||| | ||||||||||||| |||||||| || | || ||||||| | |||| Sbjct 2510469 AGCGGCAGAGATTAATTTTTGCTGGAAAGCAACTGGAAGGTGGGTGTACCCTGTCTGACT 2510410 Query 27581 ATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | | |||| || |||||||| || || ||||| || Sbjct 2510409 ACAGCATCCAGAAAGAATCCACCCTGCACTTAGTCCTG 2510372 >seq7502 Length=209603 Score = 86.0 bits (94), Expect = 7e-12 Identities = 138/197 (70%), Gaps = 5/197 (3%) Strand=Plus/Plus Query 27409 CAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGAT 27468 || |||||||| || | | || || || || || |||||||| | ||| | |||| Sbjct 174781 CAGATCTTTGTGAAAATTTTGACTGGTAAAACCATCACTCTTGAAGCAGAGCCCAGTGAC 174840 Query 27469 AGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAG 27528 | | ||| ||| | ||| | ||||| || ||||| || || ||||||||||| ||||| Sbjct 174841 ACCCTTGAGAATGTCAAGACCAAAATGCAAGACAAAGAAGGCATTCCTCCAGATGAGCAG 174900 Query 27529 CGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTC 27588 | |||| |||||| | ||||| | || ||| | | ||||| ||||| || || Sbjct 174901 AG-ATAATCTTTGCTAGAAAGCAGTTGGAACATGGTGGCACCCT----GACTACAACATC 174955 Query 27589 CAAAAGGAATCCACTCT 27605 || || ||| |||| || Sbjct 174956 CAGAAAGAACCCACCCT 174972 >seq7009 Length=1967158 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || ||||||||||| || | || Sbjct 282603 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAACCCAGT 282662 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 |||| || | ||| | || || ||||| ||||||||||| || Sbjct 282663 GATACTATCGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGG 282706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570053945670880