Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq22538 127 2e-24 seq22501 86.0 8e-12 >seq22538 Length=1593700 Score = 127 bits (140), Expect = 2e-24 Identities = 173/240 (72%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 15585 TCTGACCCTGGCCAGAAATAGGTGGCTGCCTTTATACCGTTATTAATAGCGTTTAACCAT 15644 ||||| || ||||| ||| | ||| | | ||| | ||| | || ||| | | ||| Sbjct 711471 TCTGATCCAGGCCAAAAAAATGTGCCAGACTTAAGACCTTGATACTTAGTTGTAAGCCAG 711412 Query 15645 ATTGGTACGCCCTTATACCAAGCAGGGTTAAATTTTTGATCGGTATTTGTA---GCAAAA 15701 || ||| | || |||||||| | ||||| ||||| | | ||||| || | |||| Sbjct 711411 ATAGGTTCTCCTTTATACCACTCTGGGTTGAATTTCTCTT---TATTTCTAAGTGTAAAA 711355 Query 15702 TAAGAATCCATGATAGGGTCGTACATTTTATTATCTATTATACCGTGTGATTCAGGATAT 15761 ||| || ||| | ||||| |||||||| || || || || || || ||||||||||| Sbjct 711354 GAAGCATTCATTTTTGGGTCATACATTTTGTTGTCAATGATTCCATGGGATTCAGGATAC 711295 Query 15762 AAACCGGTAACTATAGTATATAAATTAGGAAATGTTTTTGTTGGATATACCGGTCTTAAA 15821 ||||| || |||| || || ||| ||||| ||||||||||||||||| ||||| ||| Sbjct 711294 AAACCCGTGACTAGGGTGTAGTGATTGGGAAAGGTTTTTGTTGGATATACTGGTCTCAAA 711235 >seq22501 Length=2343730 Score = 86.0 bits (94), Expect = 8e-12 Identities = 134/189 (71%), Gaps = 7/189 (4%) Strand=Plus/Minus Query 32661 ATAGCCAGAGCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATT 32720 ||||| | || |||||| || ||| | || ||||| | || ||| | ||||| | Sbjct 1772557 ATAGCTGGGGCTCTGTGGTGGTACTTTGTGTCAAAAGGAGTTGAGTATTTGGATACAGTG 1772498 Query 32721 TTCTTCATAATGAGAAAGAAATTTAACCAAGTTAGCTTTT-TGCACGTATACCACCATTT 32779 |||||||| |||| |||||| || ||||| | |||| | || || || || || | Sbjct 1772497 TTCTTCATTCTGAGGAAGAAAAACAATCAAGT-ATCTTTCCTTCATGTGTATCATCACTG 1772439 Query 32780 TACCATGTTTACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGAC-----AGGCA 32834 ||| |||||||| || | ||||| || ||||| ||| | |||||||||| | ||| Sbjct 1772438 TACTATGTTTACATTGTGGTGGATTGGCATTAAGTGGGTAGCAGGAGGACAAGGTAAGCA 1772379 Query 32835 TTTTTTGGA 32843 | ||||||| Sbjct 1772378 TATTTTGGA 1772370 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 32832 GCATTTTTTGGAGCACAGATAAATTCTTTTATACATGTTATAATGTATAGTTATTACGGA 32891 |||||||||||||| ||| | ||||||||||| ||||| || |||||| ||||| || Sbjct 1769244 GCATTTTTTGGAGCTCAGCTTAATTCTTTTATCCATGTGATTATGTATTCATATTATGGC 1769185 Query 32892 TTAACAGCAATAGGTCCTTCCTTGCGAAAATATCTATGGTGGAAAAAATATTTAACTAT 32950 ||||| ||| | || || | | | |||||| | ||||||||| ||| || || || Sbjct 1769184 TTAACTGCATTTGGCCCATGGATTCAGAAATATTTGTGGTGGAAACGATACTTGACCAT 1769126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602909564673760