Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq7675 138 9e-28 seq6894 125 6e-24 seq6877 82.4 6e-11 >seq7675 Length=222078 Score = 138 bits (152), Expect = 9e-28 Identities = 300/444 (68%), Gaps = 9/444 (2%) Strand=Plus/Minus Query 29890 ATCCAGGTAGACGTGAGCGTCTCCCAGG-TTGTGGACAAACTCTCCCGGTTCTAGCCCGG 29948 || |||||| | |||| |||||||| || || ||||| || || || | ||| || Sbjct 43506 ATTCAGGTATATATGAGTATCTCCCAGAATTATGTACAAATTCACCTGGCTTTAGGCCTT 43447 Query 29949 TGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGA 30008 |||| || ||||||||||| ||||| || || || ||||| ||||| || | | || || Sbjct 43446 TGACTTGGGCCATCATGTAGGTGAGCAGGGAATAACTGGCAATGTTGAACAGCATCCTGA 43387 Query 30009 GCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAA 30068 | ||| || || || || || || | || ||| ||||||| || | || | | Sbjct 43386 GACCCTCATCTCCAGATCTTTGATATAACTAACAAGAGAGCTTGCCATTTAATACAAAGA 43327 Query 30069 ACTGACACATGGCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAGTCTTTGGGGTT--C 30124 ||| ||| | | ||| ||| ||||||| ||||| |||| | |||| || || Sbjct 43326 ACTAACAGAGAGTGTGACACAGAGGAAGTGCCATCAGAGGAAGATTCCTTTAGGATTTAG 43267 Query 30125 CAGGC---GCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCG 30181 | | |||||| ||||| | || || || |||||| | |||| ||| | Sbjct 43266 AATTCTAAGCACAC-ATGATCCTTCTTTCATCAGGGTTGGTTTTGATTGTGTCAATTAAT 43208 Query 30182 TTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCT 30241 ||||| || ||||| | | || || || |||| |||| || | || |||| Sbjct 43207 TTTTGTAGTTGATCTATTCTTTGCCTGGAATAATCTGTGTTCATTTCTTTATATTCTGAC 43148 Query 30242 CCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCG 30301 || ||||| ||| ||||||| || ||||| || |||| ||||| || |||||| | Sbjct 43147 CCAAAATGTCTCTACTGGAAGCCATACACTGGCCCCAAATCTCCTTCCTCCCTGGTAGTG 43088 Query 30302 AAGCCCCTCTTGTCCAAAAAGTCT 30325 || ||| |||||||||||||||| Sbjct 43087 AATCCCTGCTTGTCCAAAAAGTCT 43064 >seq6894 Length=939852 Score = 125 bits (138), Expect = 6e-24 Identities = 129/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 30222 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30281 |||| || |||| ||||| || ||||| ||||||||||| || ||||| ||||||| | Sbjct 56371 TCATTTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATACACTGGTCCCAAAT 56312 Query 30282 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 |||| || |||||| ||| ||| ||||||||||||||||| || || ||||| | Sbjct 56311 CTCCTTCCTCCCTGGTAGTGAATCCCTGCTTGTCCAAAAAGTCTCGAGATCCATTGGCAT 56252 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||||||| || || || || ||||||| || || | ||||| || || Sbjct 56251 CCCAGATTTTCACTCCTTTGGCAGAGAGTTCCTTAGCATTTGTAGAACC 56203 >seq6877 Length=2727454 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || ||||| |||| ||| ||||| ||| ||| ||||| || ||| || || Sbjct 2213326 TTCAGTTCTCTACTGAGAACTAAGTTAATCCTATCTTTCAAAGGTCGATGCTTCTCAGGA 2213267 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || || | |||||||||| || ||||| || ||| Sbjct 2213266 ATGGAGAACCAGGTTTTCTTTCCCATTATCAACAGATTCTGTTTACCT 2213219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406132260061608