Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq22597 109 3e-19 seq7240 107 1e-18 >seq22597 Length=1249212 Score = 109 bits (120), Expect = 3e-19 Identities = 170/239 (71%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||||| |||| ||| || ||| || || || ||||| || || || Sbjct 1181550 CCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1181491 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| || || || || ||||| || | | ||| ||||| || || Sbjct 1181490 AGGGTACGACCGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 1181431 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | ||||| |||||| ||| ||| ||||| || | ||| || || | |||||| Sbjct 1181430 ATGCCCTCTTTGTCTTGGAT-TTTGGTTTTGACATTCTCAATAGTATCACTGGGCTCCAC 1181372 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT-TGTA 34716 |||| ||| || || || || || | ||||||||||| |||||||| |||| |||| Sbjct 1181371 CTCCAGGGTGATGGTCTTCCCTGTCAGGGTTTTCACAAAGATCTGCATTGTGATCTGTA 1181313 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||||| |||| ||| || ||| || || || ||||| || || || Sbjct 1181778 CCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1181719 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 1181718 AGGGTACGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 1181659 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | ||||| |||||| ||| ||| | ||| || | ||| || || | |||||| Sbjct 1181658 ATGCCCTCTTTGTCTTGGAT-TTTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCAC 1181600 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || || || || | || |||||||| |||||||| Sbjct 1181599 TTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1181552 >seq7240 Length=45712 Score = 107 bits (118), Expect = 1e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551 |||| ||||| || || ||| || || || ||||| || || || || || ||| | Sbjct 7290 CGCAGGACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCA 7231 Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 ||||| || || || || ||||| || || | ||| ||||| || || | || || ||| Sbjct 7230 TCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCTTTG 7171 Query 34612 TCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTAT 34670 ||| ||| ||| | || || | ||| ||||| | ||||||||| | ||| || Sbjct 7170 TCT-TGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGAT 7112 Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||||||| || ||||||||||| |||||||| Sbjct 7111 GGTTTTACCGGTCAAGGTTTTCACAAAGATCTGCAT 7076 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||||| || || || ||||| || ||||| || || || Sbjct 6458 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 6399 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || || ||||| ||||| | ||| || || || || Sbjct 6398 AGGGTGCGACCATCTTCCAGCTGCTTTCCAGCAAAAATTAATCTCTGCTGATCTGGGGGG 6339 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || || || || ||||||| | || || | ||| ||||| | ||| || Sbjct 6338 ATGCCTTCTTTATCCTGGATCTTT-GCCTTGACATTCTCAATGGTGTCACTGGGCTCTAC 6280 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || || || ||||| || || ||||| ||||||||||| Sbjct 6279 TTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCAT 6232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314591612117942