Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq7240 131 1e-25 seq22597 127 2e-24 seq22615 109 5e-19 seq6982 102 7e-17 seq7502 84.2 2e-11 >seq7240 Length=45712 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| ||||||| || | || || ||||||||||| || Sbjct 7076 ATGCAGATCTTTGTGAAAACCTTGACCGGTAAAACCATCACCCTTGAAGTGGAGCCCAGT 7135 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||||||||||||||||||||||| || || || || Sbjct 7136 GACACCATTGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGCATTCCCCCAGACCAG 7195 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || ||||||| | ||| | || || |||||| Sbjct 7196 CAGAGATTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 7255 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || || || || ||| | || ||||| |||| ||| |||| || Sbjct 7256 ATCCAGAAAGAATCCACCCTTCACTTGGTCCTGCGCTTGAGGGGAGG 7302 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||||||||| | || || |||||||| || || Sbjct 6232 ATGCAGATTTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTTGAAGTAGAGCCCAGT 6291 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||| || || || ||||||||||| || || ||||| Sbjct 6292 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGATAAAGAAGGCATCCCCCCAGATCAG 6351 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | ||||| | || || || || ||||||| || ||| | || || |||||| Sbjct 6352 CAGAGATTAATTTTTGCTGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 6411 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || ||| | || ||||| | ||| | | ||||| || Sbjct 6412 ATCCAGAAGGAATCTACCCTGCACTTGGTCCTTCGTCTCAGAGGTGGGAT 6461 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| |||||| | || || ||||||||||| || Sbjct 6004 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAAGTGGAGCCCAGT 6063 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| |||||||| ||||| |||||||| || || || || Sbjct 6064 GACACCATTGAGAATGTCAAGGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGACCAG 6123 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||| || || ||||||| | ||| | || || |||||| Sbjct 6124 CAGAGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGAACCTTGTCTGACTACAAC 6183 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || ||| | || ||||| | ||| | | ||||| || Sbjct 6184 ATCCAGAAAGAATCCACCCTGCACTTGGTCCTTCGTCTCAGAGGTGGGAT 6233 >seq22597 Length=1249212 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| |||||| | || || || |||||||| || Sbjct 1182605 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTAGAAGTGGAGCCCAGT 1182664 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| |||||| ||||| ||||||||||||||||| || || || || Sbjct 1182665 GATACTATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATCCCTCCTGACCAG 1182724 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| || ||| | || || |||||| Sbjct 1182725 CAGAGGCTTATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 1182784 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || || || || ||| | ||| |||| ||||| | | |||||| Sbjct 1182785 ATCCAGAAAGAATCCACCCTTCATCTGGTCCTGCGTCTCAGAGGTGGC 1182832 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| ||||| || ||| | || || || || ||||| || Sbjct 1181324 ATGCAGATCTTTGTGAAAACCCTGACAGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 1181383 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| |||||| ||||| ||||||||||| ||||| || || || || Sbjct 1181384 GATACTATTGAGAATGTCAAAACCAAAATCCAAGACAAAGAGGGCATCCCTCCTGACCAG 1181443 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || |||||||| || ||| | || || |||||| Sbjct 1181444 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGACGGTCGTACCCTGTCTGACTACAAC 1181503 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || ||| | ||| |||| ||||| | | ||||| || Sbjct 1181504 ATCCAGAAAGAATCCACCCTTCATCTGGTCCTGCGTCTCAGAGGTGGTAT 1181553 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| |||||| | || || || |||||||| || Sbjct 1181552 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 1181611 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| |||||| ||||| ||||||||||| ||||| || || || || Sbjct 1181612 GATACTATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAGGGCATCCCTCCTGACCAG 1181671 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| || ||| | || || |||||| Sbjct 1181672 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 1181731 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || ||| | ||| |||| ||||| | | ||||| || Sbjct 1181732 ATCCAGAAAGAATCCACCCTTCATCTGGTCCTGCGTCTCAGAGGTGGTAT 1181781 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| ||||| | || || || || ||||| || Sbjct 1181780 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAAACCATCACCCTGGAGGTGGAGCCCAGT 1181839 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| |||||| ||||| ||||||||||| ||||| || || || || Sbjct 1181840 GACACTATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAGGGCATCCCTCCTGACCAG 1181899 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 ||| | | || | || ||||| || |||||||| Sbjct 1181900 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGAC 1181935 >seq22615 Length=203576 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| || || | || || ||||||||||| || Sbjct 192870 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACCCTTGAAGTGGAGCCCAGT 192929 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||| || || || ||||||||||| || || ||||| Sbjct 192930 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGATAAAGAAGGCATCCCCCCAGATCAG 192989 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || ||||||| | ||| | || || |||||| Sbjct 192990 CAGAGATTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 193049 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || ||| | || ||||| | ||| | | ||||| || Sbjct 193050 ATCCAGAAGGAATCCACCCTGCACTTGGTCCTTCGTCTCAGAGGTGGGAT 193099 >seq6982 Length=3457922 Score = 102 bits (112), Expect = 7e-17 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 26991 CAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGAC 27050 ||||| ||||| ||||| ||||||| || | || || |||||||||||||| || Sbjct 878224 CAGATCTTTGTGAAAACCTTGACCGGTAAAACCATCACCCTTGAAGTGGAACCCAGTGAT 878165 Query 27051 TCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAG 27110 | ||||||| ||||| ||||||||||| ||||||||||| || | || || ||| Sbjct 878164 ACCATTGAGAATGTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCCCTAGACCAGCAG 878105 Query 27111 CGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATT 27170 | || || | || || || || ||||||| | | ||| | || || |||||||| Sbjct 878104 AGATTGATGT--GCTGGAAACCAGCTGGAAGATGGGTGTACCCTGTCTGACTACAACATC 878047 Query 27171 CAAAAGGAGTCGACC 27185 || || || || ||| Sbjct 878046 CAGAAAGAATCCACC 878032 >seq7502 Length=209603 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/219 (69%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 26991 CAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGAC 27050 ||||| ||||| |||| | |||| || || | || |||||||||| || || ||| Sbjct 174781 CAGATCTTTGTGAAAATTTTGACTGGTAAAACCATCACTCTTGAAGCAGAGCCCAGTGAC 174840 Query 27051 TCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAG 27110 | |||||| ||||| ||||| ||||||||||||||||| || || ||| | ||| Sbjct 174841 ACCCTTGAGAATGTCAAGACCAAAATGCAAGACAAAGAAGGCATTCCTCCAGATGAGCAG 174900 Query 27111 CGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATT 27170 | |||| | || | || || |||||| | || ||| | || |||||||| Sbjct 174901 AG-ATAATCTTTGCTAGAAAGCAGTTGGAACATGGTGGCACC----CTGACTACAACATC 174955 Query 27171 CAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGG 27209 || || || | ||| | | |||||| || ||||| || Sbjct 174956 CAGAAAGAACCCACCCTGTACTTGGTTCTGGGTTTGAGG 174994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434722828068480