Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq7675 192 5e-44 seq6894 149 6e-31 >seq7675 Length=222078 Score = 192 bits (212), Expect = 5e-44 Identities = 408/607 (67%), Gaps = 13/607 (2%) Strand=Plus/Plus Query 34354 AGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTA 34413 ||||||| ||||||||| ||| ||| | | ||||||| || || ||||| || || || Sbjct 43064 AGACTTTTTGGACAAGCAGGGATTCACTACCAGGGAGGAAGGAGATTTGGGGCCAGTGTA 43123 Query 34414 CGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGG 34473 || ||||||| |||||| |||||| | || ||| | | | | || ||||| | Sbjct 43124 TGGCTTCCAGTAGAGACATTTTGGGTCAGAATATAAAGAAATGAACACAGATTATTCCAG 43183 Query 34474 ACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAG 34533 || || || || || || | | || ||||| | || ||||||||||| || Sbjct 43184 GCAAAGAATAGATCAACTACAAAAATTAATTGACACAATCAAAACCAACCCTGATGAAAG 43243 Query 34534 AAGGATCGTGATGTGCGCGTGGAA--------CCCGAAGGA-TCTCCCTCTGATGGCGCT 34584 ||||||| ||||| || | ||| || ||||| ||| ||||||||||| || Sbjct 43244 AAGGATC---ATGTGTGCTTAGAATTCTAAATCCTAAAGGAATCTTCCTCTGATGGCACT 43300 Query 34585 CCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCT 34644 || | ||| ||||| ||||| | |||| || ||||| |||| || || || | Sbjct 43301 TCCTCTGTGTCACACTCTCTGTTAGTTCTTTGTATTAAATGGCAAGCTCTCTTGTTAGTT 43360 Query 34645 CTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCT 34704 |||||| |||| ||||| ||| | || ||| |||||||||||| ||||| | || Sbjct 43361 ATATCAAAGATCTGGAGATGAGGGTCTCAGGATGCTGTTCAACATTGCCAGTTATTCCCT 43420 Query 34705 GCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGT- 34763 |||||| |||||||| || || ||| || | || || || | || |||| | Sbjct 43421 GCTCACCTACATGATGGCCCAAGTCAAAGGCCTAAAGCCAGGTGAATTTGTACATAATTC 43480 Query 34764 TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAG 34823 |||| ||| | ||||| |||||||| | || ||| || || ||| | || | || Sbjct 43481 TGGGAGATACTCATATATACCTGAATCGTATTAAGCTACTGAAAATTCAGTTTCAGCAAG 43540 Query 34824 AGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGAGCCGTCACCTCAATCGATGACTTTA 34883 | || |||| ||||| ||||||||||| || || || | || ||||| || | Sbjct 43541 AACCAAGACCTTTCCCTAAGCTCAAAATTCTTTGAAAAGTTGAAACTATTGATGATTTCA 43600 Query 34884 GGAGCGAGGACTTCGTGTTGGAAGGGTACCGGCCGCACTCGGCCCTGAAGATGGAGTTGG 34943 | |||||||||| | | |||| ||| || || | || | || |||||| ||| Sbjct 43601 AGGCCGAGGACTTCCTTATTGAAGACTACAATCCTCATCCAGCTATTAAAATGGAGATGG 43660 Query 34944 CGGTGTA 34950 | || || Sbjct 43661 CTGTCTA 43667 Score = 192 bits (212), Expect = 5e-44 Identities = 408/607 (67%), Gaps = 13/607 (2%) Strand=Plus/Minus Query 6395 TACACCGCCAACTCCATCTTCAGGGCCGAGTGCGGCCGGTACCCTTCCAACACGAAGTCC 6454 || || |||| |||||| || | || | || || ||| |||| | | ||||||| Sbjct 43667 TAGACAGCCATCTCCATTTTAATAGCTGGATGAGGATTGTAGTCTTCAATAAGGAAGTCC 43608 Query 6455 TCGCTCCTAAAGTCATCGATTGAGGTGACGGCTCGAATAATTTTGAGCTGGGGGAACGGT 6514 ||| | | || ||||| || | || || || ||||||||||| ||||| ||| Sbjct 43607 TCGGCCTTGAAATCATCAATAGTTTCAACTTTTCAAAGAATTTTGAGCTTAGGGAAAGGT 43548 Query 6515 CGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGCGCA 6574 | || ||| | || | ||| || || ||| || | |||||||| ||||| | | Sbjct 43547 CTTGGTTCTTGCTGAAACTGAATTTTCAGTAGCTTAATACGATTCAGGTATATATGAGTA 43488 Query 6575 TCCCCCA-ACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGATCATGTA 6633 || |||| | |||| || | || || || | || ||| || || |||||||| Sbjct 43487 TCTCCCAGAATTATGTACAAATTCACCTGGCTTTAGGCCTTTGACTTGGGCCATCATGTA 43428 Query 6634 CGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCG 6693 |||||||| | ||||| |||||||||||| ||| || | ||| ||||| |||| Sbjct 43427 GGTGAGCAGGGAATAACTGGCAATGTTGAACAGCATCCTGAGACCCTCATCTCCAGATCT 43368 Query 6694 TTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCA 6753 |||||| | || || || |||| ||||| || |||| | ||||| ||||| || Sbjct 43367 TTGATATAACTAACAAGAGAGCTTGCCATTTAATACAAAGAACTAACAGAGAGTGTGACA 43308 Query 6754 CGGGGGGAGCGCCATCAGAGGGAGA-TCCTTCGGG--------TTCCACGCGCACATCAC 6804 | | || || ||||||||||| ||| ||||| || ||| | || ||||| Sbjct 43307 CAGAGGAAGTGCCATCAGAGGAAGATTCCTTTAGGATTTAGAATTCTAAGCACACAT--- 43251 Query 6805 GATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGC 6864 ||||||||| ||||||||||| || | ||||| || | | || || || || Sbjct 43250 GATCCTTCTTTCATCAGGGTTGGTTTTGATTGTGTCAATTAATTTTTGTAGTTGATCTAT 43191 Query 6865 TCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTG 6924 || || | ||||| || | | | | ||| || | |||||| |||||| |||| Sbjct 43190 TCTTTGCCTGGAATAATCTGTGTTCATTTCTTTATATTCTGACCCAAAATGTCTCTACTG 43131 Query 6925 GAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAG 6984 ||| || || || || ||||| || || ||||||| | | ||| ||| ||||||||| Sbjct 43130 GAAGCCATACACTGGCCCCAAATCTCCTTCCTCCCTGGTAGTGAATCCCTGCTTGTCCAA 43071 Query 6985 AAAGTCT 6991 ||||||| Sbjct 43070 AAAGTCT 43064 >seq6894 Length=939852 Score = 149 bits (164), Expect = 6e-31 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||||||||| | || || || ||| | ||||| || ||||| | |||| Sbjct 59263 GATCTTCCTCTGATGGCATTGCCTCCATGTCACGCTCTCTGTCAGTTCTATATACTGAAT 59322 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||| || || ||| | ||||||||||| ||||| ||||| | |||||||||||| Sbjct 59323 GGCGAGCTCTCTTGTCAGTTATATCAACGATCTGGAGATATGGGCCTCGGGGTGCCGTTC 59382 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 |||||||| ||||| | |||||||| |||||||| ||||||||| Sbjct 59383 AACATTGCCAGTTATTCCCTGCTCACCTACATGATTGCTCATGTC 59427 Score = 149 bits (164), Expect = 6e-31 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||||||||| |||||||| |||||||| | ||||| |||||||||||||||||||| | Sbjct 59427 GACATGAGCAATCATGTAGGTGAGCAGGGAATAACTGGCAATGTTGAACGGCACCCCGAG 59368 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||| ||||| ||||||||||| | ||| || || ||||| |||||| | ||||| Sbjct 59367 GCCCATATCTCCAGATCGTTGATATAACTGACAAGAGAGCTCGCCATTCAGTATATAGAA 59308 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || ||||| | ||| || || || | ||||||||||| ||||| Sbjct 59307 CTGACAGAGAGCGTGACATGGAGGCAATGCCATCAGAGGAAGATC 59263 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34304 AAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTG 34363 ||||| ||||| || || ||||| |||||||| || | || |||||||||||| || Sbjct 56218 AAGGAACTCTCTGCCAAAGGAGTGAAAATCTGGGATGCCAATGGATCTCGAGACTTTTTG 56277 Query 34364 GACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAG 34423 ||||||| ||| ||| | | ||||||| || || ||||| || || || || |||||| Sbjct 56278 GACAAGCAGGGATTCACTACCAGGGAGGAAGGAGATTTGGGACCAGTGTATGGCTTCCAG 56337 Query 34424 TGGAGACACTTTGGGGCGGAGTA 34446 |||||||| |||||||| || || Sbjct 56338 TGGAGACATTTTGGGGCAGAATA 56360 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| |||||||||||||| || || || || ||||| || || |||||| Sbjct 56360 TATTCTGCCCCAAAATGTCTCCACTGGAAGCCATACACTGGTCCCAAATCTCCTTCCTCC 56301 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | ||| ||| ||||||||| |||||||||||| || | || |||||||| ||| Sbjct 56300 CTGGTAGTGAATCCCTGCTTGTCCAAAAAGTCTCGAGATCCATTGGCATCCCAGATTTTC 56241 Query 7019 ACCCCCCGGGACGAGAGCTCCTT 7041 || || || ||||| ||||| Sbjct 56240 ACTCCTTTGGCAGAGAGTTCCTT 56218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448060827605280