Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq22597 161 2e-34 seq7240 132 1e-25 seq22615 122 2e-22 seq118 93.3 1e-13 seq6888 91.5 3e-13 seq7009 89.7 1e-12 >seq22597 Length=1249212 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || ||||| ||||| ||||| |||||||| || || | ||||| | |||||| Sbjct 1182816 AGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 1182757 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| |||||||| | || ||||||||||| | ||||| ||||| Sbjct 1182756 TCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCT 1182697 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || || || || || ||| | || || || || ||||| ||| Sbjct 1182696 TGGATTTTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCACTTCTAGGGTGATGGTC 1182637 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| ||||| | |||||| Sbjct 1182636 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1182605 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || ||||| ||||| ||||| |||||||| || || | ||||| | |||||| Sbjct 1181763 AGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 1181704 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || ||||||||||| | || || ||||| Sbjct 1181703 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTGTCT 1181644 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || || || || || ||| | || || || || ||||| ||| Sbjct 1181643 TGGATTTTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCACTTCCAGGGTGATGGTC 1181584 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| ||||| | |||||| Sbjct 1181583 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1181552 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || ||||| ||||| ||||| |||||||| || || | ||||| | || ||| Sbjct 1181535 AGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCGTCT 1181476 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || ||||||||||| | || || ||||| Sbjct 1181475 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTGTCT 1181416 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || || || || || ||| | || ||||| || ||||| ||| Sbjct 1181415 TGGATTTTGGTTTTGACATTCTCAATAGTATCACTGGGCTCCACCTCCAGGGTGATGGTC 1181356 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || || || ||||| | ||||||| Sbjct 1181355 TTCCCTGTCAGGGTTTTCACAAAGATCTGCATT 1181323 Score = 109 bits (120), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 |||||||||||||||||||| ||||| || | || ||||||||||| | || || ||| Sbjct 1181934 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTG 1181875 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 || ||||| || ||| || || || || |||||| | || ||||| || ||||| Sbjct 1181874 TCTTGGATTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTGATG 1181815 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || ||||| ||||| | |||||| Sbjct 1181814 GTTTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1181780 >seq7240 Length=45712 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || ||||| ||||| |||||||| || || | | ||| | |||||| Sbjct 6215 AGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTTCGCCCATCT 6156 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| | | || ||||| || |||| |||||||||||| Sbjct 6155 TCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 6096 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || || || || || ||||||||| | || || || || ||||| ||| Sbjct 6095 TGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTC 6036 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || | ||||| ||||| | ||||||| Sbjct 6035 TTGCCAGTCAAGGTCTTCACAAAGATCTGCATT 6003 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||| ||||| ||||| |||||||| || || | ||||| | |||||| Sbjct 7287 AGGACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCT 7228 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| | | || ||||| || |||| ||||| ||||| Sbjct 7227 TCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCT 7168 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || || || || || ||||||||| | || || || || ||||| || Sbjct 7167 TGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTT 7108 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | || || ||||| | |||||| Sbjct 7107 TTACCGGTCAAGGTTTTCACAAAGATCTGCAT 7076 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || || || || || |||||||| || || | ||||| | |||||| Sbjct 6443 AGGACCAAGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCT 6384 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || || || | | || || || || || | ||||| || ||| Sbjct 6383 TCCAGCTGCTTTCCAGCAAAAATTAATCTCTGCTGATCTGGGGGGATGCCTTCTTTATCC 6324 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| || || || || ||||||||| | || || || || ||||| ||| Sbjct 6323 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATGGTC 6264 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | |||||| Sbjct 6263 TTGCCGGTCAAGGTCTTCACGAAAATCTGCAT 6232 >seq22615 Length=203576 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || ||||| || || |||||||| || || | ||||| | |||||| Sbjct 193081 AGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCT 193022 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| | | || || || || || | ||||| || ||| Sbjct 193021 TCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATGCCTTCTTTATCC 192962 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| || || || || ||||||||| | || || || || ||||| || Sbjct 192961 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTT 192902 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| ||||| | |||||| Sbjct 192901 TTACCAGTCAAGGTCTTCACAAAGATCTGCAT 192870 Score = 114 bits (126), Expect = 3e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||||||| || ||||| |||||||| || || | ||||| | |||||| Sbjct 192853 AGGACTAAGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCT 192794 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || || || | | || ||||| || || | ||||| || ||| Sbjct 192793 TCCAGCTGCTTTCCGGCAAAAATCAATCTCTGCTGGTCTGGGGGGATGCCTTCTTTATCC 192734 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||||||||| || || ||||| ||||| ||| | ||| || || || ||||| Sbjct 192733 TGGATCTTTGCCTTGACATTTTCAATGGTATCACTGGGTTCTACTTCAAGGGTGAT 192678 >seq118 Length=1243895 Score = 93.3 bits (102), Expect = 1e-13 Identities = 157/222 (71%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||||||||| ||||| |||||||| || || | ||||| ||| || Sbjct 315064 AGGACTAAGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTATGCCCACCT 315005 Query 210963 TCCAGCT--GCTTGCCTGCGAAGATAAGGCGTTGTTGGTC-AGGAGGAACTCCTTCCTTG 211019 ||||| | |||| || || || || | | || || || || || | | ||| || Sbjct 315004 TCCAGTTGGGCTTTCCAGCAAAAATTAATCTCTGCTGCTCTGGGGGGGATGCTTTCTTTA 314945 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA--GAGCTTTCAACCTCGAGAGTGA 211077 ||||||||||| || || || || ||||||||| | |||| || || || || | Sbjct 314944 TCCTGGATCTTCACCTTGACATTCTCAATGGTGTCACTGGGCTT--CACTTCAAGGGTCA 314887 Query 211078 TCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTAT 211119 | ||||| || || || ||||| ||||| | |||||| ||| Sbjct 314886 TGGTCTTACCAGTCAG-GTCTTCACAAAGAAATGCATTGTAT 314846 >seq6888 Length=4066119 Score = 91.5 bits (100), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 5/220 (2%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || ||||| ||||| |||||| | || || | ||||| | ||| || Sbjct 2510373 AGGACTAAGTGCAGGGTGGATTCTTTCTGGATGCTGTAGTCAGACAGGGTACACCCACCT 2510432 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAG-GAGGAACTCCTTCCTTGTC 211021 ||||| ||||| || || || || | | || | || | | || | ||||| || || Sbjct 2510433 TCCAGTTGCTTTCCAGCAAAAATTAATCTCTGCCGCTCTGAGGGGGATGCCTTCTTTATC 2510492 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA--GAGCTTTCAACCTCGAGAGTGATC 211079 ||||||||| || || || || ||||| ||| | |||| || | || ||||| Sbjct 2510493 CTGGATCTTCACCTTGACATTCTCAATGGTATCACTGGGCTT--CACTCCAAGGGTGATG 2510550 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTAT 211119 ||||| || || | |||||| ||||| | |||||| ||| Sbjct 2510551 GTCTTACCAGTCAAAGTCTTCACAAAGAAATGCATTATAT 2510590 >seq7009 Length=1967158 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||||||||||||||| || ||| || || ||||| || ||| | ||| ||||| Sbjct 282706 CCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCGATAGTATCACTGGGTTCGACCTCA 282647 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| ||||| || ||||| ||||| | |||||| Sbjct 282646 AGAGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 282603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158617727282510