Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq6894 105 5e-18 seq7675 91.5 1e-13 seq6877 82.4 6e-11 >seq6894 Length=939852 Score = 105 bits (116), Expect = 5e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||| ||||||||||| || ||||| ||||||| ||||| || |||||| ||| Sbjct 56348 AAATGTCTCCACTGGAAGCCATACACTGGTCCCAAATCTCCTTCCTCCCTGGTAGTGAAT 56289 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||||||||||||| || || ||||| |||||||| || || || || | Sbjct 56288 CCCTGCTTGTCCAAAAAGTCTCGAGATCCATTGGCATCCCAGATTTTCACTCCTTTGGCA 56229 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 ||||| || || | ||||| || || Sbjct 56228 GAGAGTTCCTTAGCATTTGTAGAACC 56203 Score = 100 bits (110), Expect = 2e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || ||||| ||||| |||||||| ||||| || || || ||||| ||||| || ||| Sbjct 59435 AGACCTGTGACATGAGCAATCATGTAGGTGAGCAGGGAATAACTGGCAATGTTGAACGGC 59376 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 |||||||| ||||| || || || | || || | ||| || |||||||| || | Sbjct 59375 ACCCCGAGGCCCATATCTCCAGATCGTTGATATAACTGACAAGAGAGCTCGCCATTCAGT 59316 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 | || |||||||| | || || || ||||| | ||||| ||| Sbjct 59315 ATATAGAACTGACAGAGAGCGTGACATGGAGGCAATGCCATCAGA 59271 >seq7675 Length=222078 Score = 91.5 bits (100), Expect = 1e-13 Identities = 281/442 (64%), Gaps = 13/442 (3%) Strand=Plus/Minus Query 29666 AGGTAGACGTGAGCATCTCCCAGGGTG-TGGACAAACTCTCCCGGTTCTAGCCCGGTGAC 29724 ||||| | |||| ||||||||| | || ||||| || || || | ||| || |||| Sbjct 43502 AGGTATATATGAGTATCTCCCAGAATTATGTACAAATTCACCTGGCTTTAGGCCTTTGAC 43443 Query 29725 GTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCC 29784 || ||||||||||| ||||| || || || ||||| ||||| || ||| || ||| || Sbjct 43442 TTGGGCCATCATGTAGGTGAGCAGGGAATAACTGGCAATGTTGAACAGCATCCTGAGACC 43383 Query 29785 CATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTG 29844 | || || || || || || | || || ||||||| || | || | |||| Sbjct 43382 CTCATCTCCAGATCTTTGATATAACTAACAAGAGAGCTTGCCATTTAATACAAAGAACTA 43323 Query 29845 ACACATGGCATGGCACGGAGGAAGGGCCATGAGA---------CCCAAGTCTTTGGGGTT 29895 ||| | | || ||| ||||||| ||||| ||| | || ||| | || Sbjct 43322 ACAGAGAGTGTGACACAGAGGAAGTGCCATCAGAGGAAGATTCCTTTAGGATTTAGAATT 43263 Query 29896 CCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTT 29955 | | |||||| ||||| | || || || |||||| | |||| ||| | || Sbjct 43262 CTAAGCACAC---ATGATCCTTCTTTCATCAGGGTTGGTTTTGATTGTGTCAATTAATTT 43206 Query 29956 TTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNC 30015 ||| || ||||| | | || || || |||| | Sbjct 43205 TTGTAGTTGATCTATTCTTTGCCTGGAATAATCTGTGTTCATTTCTTTATATTCTGACCC 43146 Query 30016 GAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAA 30075 ||||| ||| ||||||| || ||||| || |||| ||||| || |||||| ||| Sbjct 43145 AAAATGTCTCTACTGGAAGCCATACACTGGCCCCAAATCTCCTTCCTCCCTGGTAGTGAA 43086 Query 30076 GCCCCTCTTGTCCAAAAAGTCT 30097 ||| |||||||||||||||| Sbjct 43085 TCCCTGCTTGTCCAAAAAGTCT 43064 >seq6877 Length=2727454 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| ||| | ||| ||| ||| ||||| || ||| || || Sbjct 2213326 TTCAGTTCTCTACTGAGAACTAAGTTAATCCTATCTTTCAAAGGTCGATGCTTCTCAGGA 2213267 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || || | |||||||||| || ||||| |||||| Sbjct 2213266 ATGGAGAACCAGGTTTTCTTTCCCATTATCAACAGATTCTGTTTACCT 2213219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405985124598964