Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq571 122 7e-23 seq6963 113 4e-20 >seq571 Length=175726 Score = 122 bits (134), Expect = 7e-23 Identities = 100/122 (82%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||| ||||| ||||| |||||||| |||||||| ||||||||||||| || || Sbjct 169062 TCATCTCTACTAATTAGTTCATTAGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 169003 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| || || ||||| ||| Sbjct 169002 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAGCT 168943 Query 4692 AC 4693 || Sbjct 168942 AC 168941 Score = 100 bits (110), Expect = 2e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 4811 GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGC 4870 ||| | |||||||||||| || ||||| |||||||||||||||||||| ||||| ||||| Sbjct 166154 GTCCTTAATATAAGTGTCAATAAGTAGACTATACATTTCAGAATGTATGTTTTCCATAGC 166095 Query 4871 AATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||| || || || || || || | ||||| |||| || ||||| Sbjct 166094 AATTTGGAAGCCATAGAAACAACGGGCTTCAGTTATCTGTACTTC 166050 >seq6963 Length=4024090 Score = 113 bits (124), Expect = 4e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || |||||||| || ||||| || ||||| || | ||| ||||| | ||||||||| ||| Sbjct 2874078 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTA 2874137 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||||||||| ||||| || || || ||||| || |||||||| || || || || Sbjct 2874138 AGCCAAAATATAGCAGCAAACGAACCCGAGAAGAAAATCCCTTCTACAGCAGCGAAAGCG 2874197 Query 4692 AC 4693 || Sbjct 2874198 AC 2874199 Score = 93.3 bits (102), Expect = 4e-14 Identities = 100/131 (76%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 4921 AAAATCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAA 4979 |||||| ||| || || ||||| || ||||| || ||||||||||||||||| ||||| Sbjct 2880214 AAAATCACTCTTACCAAATTTTCATTGACTATTCCATCACTGGCTGCAAAAAAAGCCAAG 2880273 Query 4980 ACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTA 5039 | ||||| || || || | || || | || ||||| ||||| || || | |||||| Sbjct 2880274 ATGTGAGAGATGAAATATTTCTCATCTGATTTCAGTTTGTTCCAATGAGGAAGATCTTTT 2880333 Query 5040 GTTAAATCAAC 5050 | ||||||||| Sbjct 2880334 GATAAATCAAC 2880344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426862367309342