Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq7675 138 8e-28 seq6894 116 3e-21 >seq7675 Length=222078 Score = 138 bits (152), Expect = 8e-28 Identities = 396/604 (66%), Gaps = 9/604 (1%) Strand=Plus/Minus Query 26996 AGACTGCCATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGAGAAATCCT 27055 |||| |||||| ||| | || || |||||||| | ||| | || | ||| |||| Sbjct 43666 AGACAGCCATCTCCATTTTAATAGCTGGATGAGGATTGTAGTCTTCAATAAGGAAGTCCT 43607 Query 27056 CTGCCTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTC 27115 | ||||| || || || | | || || | | || | || | || || |||| Sbjct 43606 CGGCCTTGAAATCATCAATAGTTTCAACTTTTCAAAGAATTTTGAGCTTAGGGAAAGGTC 43547 Query 27116 TGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGT 27175 | || || || | |||| | ||||| | | | ||| |||||| | |||| | Sbjct 43546 TTGGTTCTTGCTGAAACTGAATTTTCAGTAGCTTAATACGATTCAGGTATATATGAGTAT 43487 Query 27176 CTCCCAGGGTG-TGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTAC 27234 ||||||| | || ||||| || || || | ||| || |||| || ||||||||||| Sbjct 43486 CTCCCAGAATTATGTACAAATTCACCTGGCTTTAGGCCTTTGACTTGGGCCATCATGTAG 43427 Query 27235 GTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTC 27294 ||||| || || || ||||| ||||| || | | || ||| ||| || || || || Sbjct 43426 GTGAGCAGGGAATAACTGGCAATGTTGAACAGCATCCTGAGACCCTCATCTCCAGATCTT 43367 Query 27295 TGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCAC 27354 || || | || ||| ||||||| |||| ||| | |||| ||| | | ||| ||| Sbjct 43366 TGATATAACTAACAAGAGAGCTTGCCATTTAATACAAAGAACTAACAGAGAGTGTGACAC 43307 Query 27355 GGAGGAAGAGCCAT--GAGGCCCAAGTCTTTGGGGTT--CCAGGC---GCACACGATGAT 27407 ||||||| ||||| |||| | |||| || || | | |||||| ||||| Sbjct 43306 AGAGGAAGTGCCATCAGAGGAAGATTCCTTTAGGATTTAGAATTCTAAGCACAC-ATGAT 43248 Query 27408 GCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCC 27467 | || || || |||||| | |||| ||| | ||||| || ||||| | | Sbjct 43247 CCTTCTTTCATCAGGGTTGGTTTTGATTGTGTCAATTAATTTTTGTAGTTGATCTATTCT 43188 Query 27468 CATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAA 27527 || || || ||| |||| || | || |||| || ||||| ||| | ||||| Sbjct 43187 TTGCCTGGAATAATCTGTGTTCATTTCTTTATATTCTGACCCAAAATGTCTCTACTGGAA 43128 Query 27528 CCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAA 27587 || ||||| || |||| ||||| || |||||| ||| ||| |||||||||||| Sbjct 43127 GCCATACACTGGCCCCAAATCTCCTTCCTCCCTGGTAGTGAATCCCTGCTTGTCCAAAAA 43068 Query 27588 GTCT 27591 |||| Sbjct 43067 GTCT 43064 >seq6894 Length=939852 Score = 116 bits (128), Expect = 3e-21 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 27488 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGT 27547 |||| || |||| ||||| || ||||| ||||| ||||| || ||||| ||||||| | Sbjct 56371 TCATTTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATACACTGGTCCCAAAT 56312 Query 27548 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 |||| || |||||| ||| ||| ||||||||||||||||| || || ||||| | Sbjct 56311 CTCCTTCCTCCCTGGTAGTGAATCCCTGCTTGTCCAAAAAGTCTCGAGATCCATTGGCAT 56252 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||||||| || || || || | ||||| || || | ||||| || || Sbjct 56251 CCCAGATTTTCACTCCTTTGGCAGAGAGTTCCTTAGCATTTGTAGAACC 56203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369345195803594