Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq30399 187 3e-42 seq15323 125 1e-23 seq571 111 2e-19 seq6963 89.7 7e-13 >seq30399 Length=2248691 Score = 187 bits (206), Expect = 3e-42 Identities = 886/1374 (64%), Gaps = 84/1374 (6%) Strand=Plus/Plus Query 76785 AACTGAATTGGAGA-AGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACC 76843 |||||||| ||| ||| || | | |||| | | ||| ||||| |||| || ||| Sbjct 1676649 AACTGAAT--GAGTTAGAAGCTGATCTTGTCCTCAAATAATACATTCCAGGATTCAGATT 1676706 Query 76844 CAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATG 76903 | | ||| || ||||| || ||||| || | ||| ||| | || || || || || Sbjct 1676707 CTGCGTCCTACCATAGAAGTGGATGCTGGTAATTTTCCTTTAAGTGGGCTCAGCAATGTG 1676766 Query 76904 AATATTCATCGACTGACTTTGATCGATGAA-AGCTCCTCTATCAGCCGCCATTTTTATAA 76962 ||||||| |||||||| ||||| ||||| | | ||| |||||||| |||| | || Sbjct 1676767 GATATTCAAAGACTGACTCTGATCAATGAATATCCCCT-TATCAGCCACCATACTGG-AA 1676824 Query 76963 TGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGT 77022 || || || | |||||| | | | | || | | | || | ||| || |||| | Sbjct 1676825 CAGTTTTGTGTGCCATTTCCAACACAATCTTATACAACTCATTCAGATCTTCAGGAATTT 1676884 Query 77023 TTGT---ATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCC 77079 || || ||||| || || || || || || || ||||| || ||||||| Sbjct 1676885 CAGTGATATACTGAATAGAGACATCACATGCAATTATCTGGTT-TTTATCTCTTCATTCC 1676943 Query 77080 ACAATTTCCT--CTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCC 77137 | | ||| |||||| | | || || | || |||| |||||| Sbjct 1676944 ATAGG--CCTTGCTCTGTCAGATCTTCCAGCA----AG-----------TGAACTTCTCC 1676986 Query 77138 AGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCC 77197 ||| ||||| ||||||||||||| ||||| || ||||| || | ||| || || Sbjct 1676987 CAACAGGACTCTCTGAGTGTAAATATTGCTGGTGTAAGGTTCTGTGGACTGATTATTCCC 1677046 Query 77198 CAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACC 77257 ||||| ||| | ||| ||||||| || || | || ||||| ||||||| || Sbjct 1677047 TAAAATCTGAA------AGGCAATTGGCATTGGGGCAAACAGCAAACTGTTTCTGATGCC 1677100 Query 77258 ATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATC 77317 || | || || | || | ||| |||||||| ||| || ||| ||| ||||| Sbjct 1677101 AT-TATTTTGCAATATTCGTG-AGAATTTTCCAATTCCACAGTTCTATAGGAGTGACATC 1677158 Query 77318 CCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGG 77377 ||| | ||| ||||| |||||| | || | | | || || | |||||||||||| || Sbjct 1677159 CCACATATCATATTGAAGAATTTCTTTGCAAACTGGAGAGCCTTCATATGTTTCATATGG 1677218 Query 77378 TCC-TTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGA 77436 || | || ||| || | ||||| || | ||| | | || ||||||| ||||| | Sbjct 1677219 GCCATGCTCTTT-GGCCAAATCACAGCTGCCCTCCTAGTCACCACAATAAATGGTTTCAA 1677277 Query 77437 AAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAA 77496 | |||| ||||| || ||| || || | | ||||| ||||| | | || |||| Sbjct 1677278 AGATCTGTTTATTTAGCAATTGGGCCTCTGGAGTGTCAAAAGGATACTTCATCAGGATAA 1677337 Query 77497 AGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTT 77556 | ||||| ||| ||| ||| ||||||||| || ||| | ||||| || | Sbjct 1677338 A-GCATCAGCTTGATTCTGCTCTCTAATACCAATGGGGTGATGACATTTATTTGACAAAC 1677396 Query 77557 TAGCTTCT-GGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACT 77615 | || ||| || || | |||| | | ||||| ||||||||||| | || |||| Sbjct 1677397 TTGCCTCTAGGGCTA-GTTAAT-AGTGATGTCAATAATTTTATTTAAGTTGTGTACAATG 1677454 Query 77616 ACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCT----TCCATCTATAACAAACAT 77671 ||||| | || ||||| | || || || | |||| | || |||||||| Sbjct 1677455 ACTTTGGTACCTTCAGCCAGTTTCTGGAAGCCATATATATGCTCCAAC-ATGACAAACAT 1677513 Query 77672 GTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTAT 77731 ||| | | ||| | | ||||| ||||| ||||||| | | ||| | ||| Sbjct 1677514 AATCAGGACCAAAGAAGACAAGTTACAGACTGCAACCTCATCTTTTCTAGTATACTCTAT 1677573 Query 77732 TATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTT 77791 ||| || || |||| ||| || | |||||| | || ||||| || ||||| || Sbjct 1677574 TATTTCTGTGCATAAATTGCTGCCTTTGATGGCCTCCTAGTTTTGCTGATTGCTTTTCCA 1677633 Query 77792 ATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 ||| || ||| || || | |||| | ||| |||| || || |||| || || || || Sbjct 1677634 ATTACAGCTGTCTTTGTAGAAAATATAAGGAATCCCTGTCTCTGTCTGGGACTCAATGAT 1677693 Query 77852 AG-AT-TTC-----CAGACGACTCTA----GCTTTTA-----TCATAGATTTGTATCGCC 77895 || || ||| || | || ||| ||||||| | | ||| || ||| Sbjct 1677694 AGCATATTCAATGATAGCCCAC-CTATTGGGCTTTTACAACCTTACAGACATG-ATC--- 1677748 Query 77896 TCTCTCTTTCATATTGAGTAT-ATAGCCGT-TCAAATTCATCTCCCCAAACATCATCCAA 77953 | | | ||||| | | | || | | | ||||||| |||||||||| ||| || Sbjct 1677749 -TTTTTTCTCATA---ACTTTCATTGACATCTCAAATTTTTCTCCCCAAA---CATTCAG 1677801 Query 77954 TCCAGGGCATTCATTTGGGCACATCAATGACCAGTC---ACCATCTTCCTTAACTCGTTT 78010 |||| || ||||| || ||||||| || ||||| | || |||| || | |||| Sbjct 1677802 ACCAGATCACTCATTAGGACACATCAGGGAGCAGTCCTGATTATTTTCC--AAAT-GTTT 1677858 Query 78011 CATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATT 78070 || ||||||| || ||||| || || || | ||||| || | || ||||| || Sbjct 1677859 GATGAAGAGATTTGGGATCCAAAGGATAAAGAAAATATCTCTGGCTTACTGCTCTTCCTT 1677918 Query 78071 TCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTC 78124 ||| | || || || | ||| || || || | || || | |||| ||||| Sbjct 1677919 TCCAATGTTTTTCTTTAAATCAAGGAATTCAAAGATGTCTAAGAGCCAGGGTTC 1677972 >seq15323 Length=1134477 Score = 125 bits (138), Expect = 1e-23 Identities = 132/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 78742 CACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAA 78801 |||| || | |||||||||||| ||||| | |||||| ||||| || || || |||| || Sbjct 882221 CACTGAACACTTTTTTTGTTTCTTTGTGCAAATTAGAAACAGCAATCCTGGCTGCTAAAA 882162 Query 78802 TAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTA 78861 |||||||||| ||||||| || || | || || | | |||| || || | | |||| Sbjct 882161 TAGCATAATCTGGATGTTTGGTGGTCAAGGTTGCAGATGTTTCAGCAGCCAGGGTGTCTA 882102 Query 78862 ACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGATTT 78915 |||| | || || || ||| | |||| |||||| ||||||||||||| |||| Sbjct 882101 ACTCCACTGTGGTCACTCCACTGTATAATCCTTGGATAACTTTCATGGTTATTT 882048 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| |||| ||||| ||||| |||||||| ||||| || ||||| | || Sbjct 902708 TGAAATTCTCCTGACAGGACTCTCCGAGTATAAATATTGCTGGTGTAAGGTTCAATGGAC 902649 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || || ||||| ||||||||||| ||||||||||| || || | || ||||| Sbjct 902648 TCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGCAAACTG 902589 Query 77247 TTTCTGAGACCAT 77259 ||||||| |||| Sbjct 902588 TTTCTGATGCCAT 902576 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 77355 GATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413 || || | |||||||||||| || || | || || | ||| |||| || |||||||| Sbjct 895832 GACCCTTCATATGTTTCATATGGGCCATACTCCTTGGCCAAGT-CACAGCTGGCTTCCAA 895774 Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473 || || |||||||| ||||| || |||| ||||| | || || || ||| || Sbjct 895773 GGCACCATAATAAATGGTTTCAAAGATCTGTTTATTCAACAACTGGGCCTCTGGACTCTC 895714 Query 77474 AAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGG 77533 ||| ||||| | || ||||| ||||| |||| || || ||||| ||||||||||| Sbjct 895713 AAAAGGATATCTCATCAGGATAAAAGCATCAGCTAGACCTTGCACTCCGATACCAATAGG 895654 Query 77534 TCTATGTCTCTTATTGGA 77551 | ||| | ||||| || Sbjct 895653 GCGATGACGTTTATTTGA 895636 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || |||||||| || | || || || ||||| |||||||| | ||||| || || ||| Sbjct 886028 GTGCCTGCATTGAAGAGGGTGGGGGAAGCATGAGTAAACCACCTCTCAGAGAGAAGGTTG 885969 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || ||||||||||| | || |||||| || |||||||| || | || | ||| | | Sbjct 885968 TAGGTTTCAATAGCAGCATCAATGTCCTCTTTGTGAATTCCCACAGACACTCTCATTAGC 885909 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 || || || |||| |||| || Sbjct 885908 ATGTGTTGGGGTCGTTCAGCC 885888 >seq571 Length=175726 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||||||||||| ||| |||||||| || | || ||||||| || ||||| ||| Sbjct 169062 TCATCTCTACTAATTAGTTCATTAGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 169003 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 169002 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAGC 168944 Score = 109 bits (120), Expect = 8e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| ||||||||| | || ||||| || || | ||||| || || |||||||| ||| Sbjct 172702 GACATCACTCCCATTCTCTGGTATTCTCCTACTCTCTTCTCAAAGAAGTTAGTTTTTCCT 172643 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAT 47944 |||||||| ||||| |||||||||||||||||||| |||| || |||| Sbjct 172642 TCCAATGAGATATTCTCCATAAAATCAAATGGATTTTCTGCCCTAAAAAT 172593 >seq6963 Length=4024090 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | ||| || ||||| ||||| || ||||| || || | || || Sbjct 2874078 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTA 2874137 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||||||||| || || || || || || ||||| || |||||||| || || || ||| Sbjct 2874138 AGCCAAAATATAGCAGCAAACGAACCCGAGAAGAAAATCCCTTCTACAGCAGCGAAAGCG 2874197 Query 48285 GTAAGTCTCTCTCC 48298 | ||| ||||| Sbjct 2874198 ACCACTCTTTCTCC 2874211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694356424807360