Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq30399 212 9e-50 seq6963 120 4e-22 seq571 116 5e-21 seq15323 114 2e-20 >seq30399 Length=2248691 Score = 212 bits (234), Expect = 9e-50 Identities = 904/1394 (65%), Gaps = 86/1394 (6%) Strand=Plus/Plus Query 75361 TTTATTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTA 75420 ||| | ||| | || | |||||||||| | || | |||| | |||| | | ||| || Sbjct 1676630 TTTTTCCTTCTTCAGAGAGAACTGAATGAGTTAGAA-GCTGATCTTGTCCTCAAATAATA 1676688 Query 75421 CATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATA 75480 ||| |||| || ||| | | ||| || ||||| || ||||| || | ||| || Sbjct 1676689 CATTCCAGGATTCAGATTCTGCGTCCTACCATAGAAGTGGATGCTGGTAATTTTCCTTTA 1676748 Query 75481 ACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAA-AGCTCCTCTAT 75539 | | || || || || || ||||||| |||||||| ||||| ||||| | | ||| ||| Sbjct 1676749 AGTGGGCTCAGCAATGTGGATATTCAAAGACTGACTCTGATCAATGAATATCCCCT-TAT 1676807 Query 75540 CAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTT 75599 ||||| |||| | || || || || | |||||| | | | | || | | | | Sbjct 1676808 CAGCCACCATACTGG-AACAGTTTTGTGTGCCATTTCCAACACAATCTTATACAACTCAT 1676866 Query 75600 TGATATCATCTGGAAGATTTGT---ATTTTGAATGGATCCGCCATCAGATATAATTGTAT 75656 | | ||| || |||| | || || ||||| || | ||||| || |||| | | Sbjct 1676867 TCAGATCTTCAGGAATTTCAGTGATATACTGAATAGA---GACATCACATGCAATTATCT 1676923 Query 75657 --TCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATT 75714 | || ||||| |||||||| | | ||| || | | || || | || Sbjct 1676924 GGTTTTTATCTCTTCATTCCATAGGCCTTGCTCTGTCAGATCTTCCAGCA----AG---- 1676975 Query 75715 AACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTC 75774 |||| |||||| ||| ||||| ||||||||||||| ||||| || ||||| Sbjct 1676976 -------TGAACTTCTCCCAACAGGACTCTCTGAGTGTAAATATTGCTGGTGTAAGGTTC 1677028 Query 75775 CACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAA 75834 || | ||| || || ||||| ||| | ||| | ||||| || || | || Sbjct 1677029 TGTGGACTGATTATTCCCTAAAATCTGAA------AGGCAATTGGCATTGGGGCAAACAG 1677082 Query 75835 TAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAG 75894 ||||| ||||||| |||| | || || | || | ||| |||||||| ||| || Sbjct 1677083 CAAACTGTTTCTGATGCCAT-TATTTTGCAATATTCGTG-AGAATTTTCCAATTCCACAG 1677140 Query 75895 ATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCC 75954 ||| || |||||||| | ||| ||||| |||||| | |||| | | || || Sbjct 1677141 TTCTATAGGAGTGACATCCCACATATCATATTGAAGAATTTCTTTGCAAACTGGAGAGCC 1677200 Query 75955 ATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACC 76014 | ||||||||| || | || | || || || | || || || |||| | |||| Sbjct 1677201 TTCATATGTTTCATATGGGCCATGCTCTTTGGCCAAATCACAGCTGCCCTCCTAGTCACC 1677260 Query 76015 GTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGG 76074 ||||||| ||||| || |||| ||||| || ||| || || || | |||||||| Sbjct 1677261 ACAATAAATGGTTTCAAAGATCTGTTTATTTAGCAATTGGGCCTCTGGAGTGTCAAAAGG 1677320 Query 76075 ATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATG 76134 ||| | | || ||||| ||||| ||| | ||| ||| ||||||||| || ||| Sbjct 1677321 ATACTTCATCAGGATAAA-GCATCAGCTTGATTCTGCTCTCTAATACCAATGGGGTGATG 1677379 Query 76135 TCTCTTATTGG--AAATTTCAGCTTCT-GGAATAGGGTAATAATTAATATCTATAATTTT 76191 | ||||| | ||| || || ||| || || | |||| | | || || |||||||| Sbjct 1677380 ACATTTATTTGACAAACTT--GCCTCTAGGGCTA-GTTAAT-AGTGATGTCAATAATTTT 1677435 Query 76192 ATTGAGATTTCTG-ACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTT-- 76248 ||| | | || || |||| ||||| | || ||||| | || || || | Sbjct 1677436 ATTTA-AGTTGTGTACAATGACTTTGGTACCTTCAGCCAGTTTCTGGAAGCCATATATAT 1677494 Query 76249 --TCCATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCA 76306 |||| | || ||||||||| | || | | ||| | | ||||| || || |||||| Sbjct 1677495 GCTCCAAC-ATGACAAACATAATCAGGACCAAAGAAGACAAGTTACAGACTGCAACCTCA 1677553 Query 76307 TTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAG-TTCCAAG 76365 | | | ||| | |||||| || ||||||| ||| || | ||||| | ||| || Sbjct 1677554 TCTTTTCTAGTATACTCTATTATTTCTGTGCATAAATTGCTGCCTTTGATGGCCTCCTAG 1677613 Query 76366 ATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGT 76425 ||||| || ||||| || ||||| ||| || || | || | | ||| | || || Sbjct 1677614 -TTTTGCTGATTGCTTTTCCAATTACAGCTGTCTTTGTAGAAAATATAAGGAATCCCTGT 1677672 Query 76426 TTCAATCTGTGATTCGATAATAG-AT-TTC-----CAGACGACTCTA----GCTTTTA-- 76472 || |||| || || || |||| || ||| || | || ||| ||||||| Sbjct 1677673 CTCTGTCTGGGACTCAATGATAGCATATTCAATGATAGCCCAC-CTATTGGGCTTTTACA 1677731 Query 76473 ---TTATAGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCAT 76529 ||| ||| || ||| || || ||||| | || | || ||||||| | Sbjct 1677732 ACCTTACAGACATG-ATCTTTTTTC----TCATAACTTTCAT-TGACATCTCAAATTTTT 1677785 Query 76530 CTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCA---CTCAC 76586 ||||||||| ||| || ||||| || ||||| |||||||||| || || || | Sbjct 1677786 CTCCCCAAA---CATTCAGACCAGATCACTCATTAGGACACATCAGGGAGCAGTCCTGAT 1677842 Query 76587 CATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTC 76646 || |||| | |||| || ||||||| || ||||| || || || | ||||| Sbjct 1677843 TATTTTCC---AAATGTTTGATGAAGAGATTTGGGATCCAAAGGATAAAGAAAATATCTC 1677899 Query 76647 GGGTTCTAC-GTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCA 76705 || | ||| | ||||| ||||| | || || || | ||| ||||| || | || || Sbjct 1677900 TGGCT-TACTGCTCTTCCTTTCCAATGTTTTTCTTTAAATCAAGGAATTCAAAGATGTCT 1677958 Query 76706 GAATGCCATGGTTC 76719 | |||| ||||| Sbjct 1677959 AAGAGCCAGGGTTC 1677972 Score = 107 bits (118), Expect = 3e-18 Identities = 212/314 (68%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 77302 AGGATTAACATAGTTAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTT 77361 |||||| | |||||| | | ||| ||||| || || || || | ||| |||| ||| || Sbjct 1678637 AGGATTTATTTAGTTATAAAGGTCCTCCATCACATCACTGAACACTTTCTTTGCTTCTTT 1678696 Query 77362 GTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGT 77421 || | ||| | || ||||| || |||| ||| ||||| || || | || || || Sbjct 1678697 ATGCAAATTATAAACAATAATTCTGGCTGCTAAAATGGCATAATCTGGGTCTTTGGTGGT 1678756 Query 77422 GCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACTCCGTTATA 77481 ||| || | | |||| | || || ||||||||||| || || || || |||| Sbjct 1678757 CAGGGTTGCAGTTGTTTCAACTGCCAAGGTATCTAATTCCCCTGTGGTCACCCCACTATA 1678816 Query 77482 TAGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTACAAACTCGGTGTTCAAACC 77541 | ||||| |||| ||||||| |||| | | |||| ||||| || |||| | | Sbjct 1678817 TTATCCTTGGATAAGTTTCATGATGATTTGAACATGATCAACAAATTCCATGTTGAGTCT 1678876 Query 77542 ATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGACATTCTCCTTACATCC 77601 ||| | | ||| || | ||| || || || ||||||||||| | |||| || Sbjct 1678877 ATAGTAGAGTTTCTGTATCCTAGAAGTAATATTGTCAAACATGACCTCATCCTGGTGGCC 1678936 Query 77602 ATTTCGTTTAATGA 77615 || || |||||||| Sbjct 1678937 ATCTCATTTAATGA 1678950 >seq6963 Length=4024090 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | ||| || ||||| ||||| |||||||| || || | ||| || Sbjct 2874078 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTA 2874137 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||||||||| || || || || || ||||| || ||||||||||| ||||| ||| Sbjct 2874138 AGCCAAAATATAGCAGCAAACGAACCCGAGAAGAAAATCCCTTCTACAGCAGCGAAAGCG 2874197 Query 46774 ACAAGTCTCTCTCC 46787 || | ||| ||||| Sbjct 2874198 ACCACTCTTTCTCC 2874211 Score = 89.7 bits (98), Expect = 7e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 |||||| ||||| |||||||||||||| || |||||||| ||||| | || || || Sbjct 2880228 CAAATTTTCATTGACTATTCCATCACTGGCTGCAAAAAAAGCCAAGATGTGAGAGATGAA 2880287 Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTAC 47129 |||||| ||||| | ||||||| ||||| | | | ||||||||||| ||| || Sbjct 2880288 ATATTTCTCATCTGATTTCAGTTTGTTCCAATGAGGAAGATCTTTTGATAAATCAAC 2880344 >seq571 Length=175726 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||||||||||| ||| |||||||| || | |||||||||| || || || ||| Sbjct 169062 TCATCTCTACTAATTAGTTCATTAGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 169003 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| ||||||||||| || ||||| ||||| || || || Sbjct 169002 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAGCT 168943 Query 46774 ACAA 46777 |||| Sbjct 168942 ACAA 168939 Score = 111 bits (122), Expect = 2e-19 Identities = 82/96 (85%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 |||||| ||||||||| | |||||||| ||||| | ||||| || || |||||||| || Sbjct 172703 TGACATCACTCCCATTCTCTGGTATTCTCCTACTCTCTTCTCAAAGAAGTTAGTTTTTCC 172644 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 ||||||||| ||||| |||||||||||||| ||||| Sbjct 172643 TTCCAATGAGATATTCTCCATAAAATCAAATGGATT 172608 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950 || |||| ||| || || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 166153 TCCTTAATATAAGTGTCAATAAGTAGACTATACATTTCAGAATGTATGTTTTCCATAGCA 166094 Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 || || || || || ||||| | |||||||| |||||||| ||| Sbjct 166093 ATTTGGAAGCCATAGAAACAACGGGCTTCAGTTATCTGTACTTCT 166049 >seq15323 Length=1134477 Score = 114 bits (126), Expect = 2e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| |||| ||||| ||||| |||||||| ||||| || ||||| | || Sbjct 902708 TGAAATTCTCCTGACAGGACTCTCCGAGTATAAATATTGCTGGTGTAAGGTTCAATGGAC 902649 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || || ||||| |||||||| || ||||| ||||| || || | || ||||| Sbjct 902648 TCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGCAAACTG 902589 Query 75842 TTTCTGAGACCAT 75854 ||||||| |||| Sbjct 902588 TTTCTGATGCCAT 902576 Score = 107 bits (118), Expect = 3e-18 Identities = 127/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | |||||||||||| ||||| | ||| || || || || || || |||| ||| Sbjct 882219 CTGAACACTTTTTTTGTTTCTTTGTGCAAATTAGAAACAGCAATCCTGGCTGCTAAAATA 882160 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||| || ||||||| || || |||| || | | |||| || || | || ||||| Sbjct 882159 GCATAATCTGGATGTTTGGTGGTCAAGGTTGCAGATGTTTCAGCAGCCAGGGTGTCTAAC 882100 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTT 77510 || | || || ||||| | |||| ||||| ||||||||||||| ||||| Sbjct 882099 TCCACTGTGGTCACTCCACTGTATAATCCTTGGATAACTTTCATGGTTATTT 882048 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009 || || | ||||||||| || | || | || | || | || || || || || || Sbjct 895832 GACCCTTCATATGTTTCATATGGGCCATACTCCTTGGCCAAGTCACAGCTGGCTTCCAAG 895773 Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTTGCGCTTCAAGACTATC 76068 ||||| |||||||| ||||| || |||| ||||| || | || | || || |||| || Sbjct 895772 GCACCATAATAAATGGTTTCAAAGATCTGTTTATTCAACAACTGG-GCCTCTGGACTCTC 895714 Query 76069 AAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGG 76128 ||||||||| | || ||||| ||||| ||||| || || ||||| ||||||||||| Sbjct 895713 AAAAGGATATCTCATCAGGATAAAAGCATCAGCTAGACCTTGCACTCCGATACCAATAGG 895654 Query 76129 TCTATGTCTCTTATTGGA 76146 | ||| | ||||| || Sbjct 895653 GCGATGACGTTTATTTGA 895636 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 76510 ATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACA 76569 ||||||| |||||||| ||||||||||||||||||| ||||||||| ||||| ||||| Sbjct 891090 ATATAACTTCTCAAATTCTTCTCCCCAAACATCATCCAGACCAGGACACTCATTAGGACA 891031 Query 76570 CATCAATGACCACTC 76584 ||||| ||||| || Sbjct 891030 CATCAGGGACCAATC 891016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712613811223680