Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq6894 82.4 3e-11 >seq6894 Length=939852 Score = 82.4 bits (90), Expect = 3e-11 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA-GGTAAGCTTTC 52168 ||||| ||| |||| || || | || | || |||||| || ||||| || |||| || Sbjct 59275 ATGGCATTGCCTCCATGTCACGCTCTCTGTCAGTTCTATATA-CTGAATGGCGAGCTCTC 59333 Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 || || || ||||| || |||| || ||| | | || || ||||| ||||||||||| Sbjct 59334 TTGTCAGTTATATCAACGATCTGGAGATATGGGCCTCGGGGTGCCGTTCAACATTGCCAG 59393 Query 52229 CTATTCCTTGCTGACGCATCTGATTGCTC 52257 |||||| |||| || | ||||||||| Sbjct 59394 TTATTCCCTGCTCACCTACATGATTGCTC 59422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190014792652140