Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq22597 140 7e-28 seq7240 134 3e-26 seq22615 105 2e-17 >seq22597 Length=1249212 Score = 140 bits (154), Expect = 7e-28 Identities = 166/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| |||||||| || || ||||| ||||||||||| || | | || Sbjct 1182825 CTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTA 1182766 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || || || || |||||||||||||||||||| | | ||| ||| Sbjct 1182765 CGACCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCT 1182706 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || || ||||| ||||| ||||||| |||| | | || ||| ||| ||||| Sbjct 1182705 TCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATAGTATC---ACTGGGCTCCACTTCT 1182649 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| || |||||||| |||| |||||| Sbjct 1182648 AGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1182605 Score = 131 bits (144), Expect = 4e-25 Identities = 164/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| |||||||| || || ||||| ||||||||||| || | | || Sbjct 1181772 CTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTA 1181713 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || || || || ||||| |||||||||||||| | | ||| || Sbjct 1181712 CGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCC 1181653 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || || ||||| ||||| ||||||| |||| | | || ||| ||| ||||| Sbjct 1181652 TCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATAGTATC---ACTGGGCTCCACTTCC 1181596 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| || |||||||| |||| |||||| Sbjct 1181595 AGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1181552 Score = 109 bits (120), Expect = 1e-18 Identities = 160/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| |||||||| || || ||||| ||||||||||| || | | || Sbjct 1181544 CTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTA 1181485 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | || ||||| || || || || ||||| |||||||||||||| | | ||| || Sbjct 1181484 CGACCGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCC 1181425 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || || ||||| ||||| ||||||| |||| | | || ||| ||| || || Sbjct 1181424 TCTTTGTCTTGGATTTTGGTTTTGACATTCTCAATAGTATC---ACTGGGCTCCACCTCC 1181368 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || || || || ||||| |||| ||||||| Sbjct 1181367 AGGGTGATGGTCTTCCCTGTCAGGGTTTTCACAAAGATCTGCATT 1181323 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/146 (74%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || ||||| |||||||||||||| | | ||| || || || ||||| ||||| Sbjct 1181922 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTGTCTTGGATTTTG 1181863 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCC 152078 ||||||| |||| | |||| ||| ||| || || || || || |||||||| Sbjct 1181862 GCTTTGACATTCTCAATAGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCT 1181806 Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104 || || |||||||| |||| |||||| Sbjct 1181805 GTCAGGGTCTTCACAAAGATCTGCAT 1181780 >seq7240 Length=45712 Score = 134 bits (148), Expect = 3e-26 Identities = 168/227 (74%), Gaps = 10/227 (4%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| | || || || || ||||| ||||||||||| || | || ||| Sbjct 6224 CTGAGACGAAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTT 6165 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | ||||||||| || ||||| ||||| ||||| | ||||||||||| | | || | Sbjct 6164 CGCCCATCTTCCAGCTGCTTT--CCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGC 6107 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTT 152058 ||||||| || |||||||| |||||| |||| | | |||| ||| ||| |||| Sbjct 6106 CTTCCTTGTCCTGAATTTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACTT 6050 Query 152059 CAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||| || || || ||||| || | |||||||| |||| ||||||| Sbjct 6049 CAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATT 6003 Score = 116 bits (128), Expect = 9e-21 Identities = 158/217 (73%), Gaps = 10/217 (5%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||||| || || ||||| ||||||||||| || | | || | ||||||| Sbjct 7287 AGGACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCT 7228 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || ||||| | ||||||||||| | | || ||||| || | Sbjct 7227 TCCAGCTGCTTT--CCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCTTTGT 7170 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAA 152067 |||||||||| |||||| |||| | | |||| ||| ||| |||||||| || | Sbjct 7169 CTTGAATTTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACTTCAAGGGTGA 7113 Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || || | || ||||| |||| |||||| Sbjct 7112 TGGTTTTACCGGTCAAGGTTTTCACAAAGATCTGCAT 7076 Score = 105 bits (116), Expect = 2e-17 Identities = 161/226 (71%), Gaps = 10/226 (4%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| | || || ||||| || || ||||||||||| || | | || Sbjct 6452 CTGAGACGAAGGACCAAGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTG 6393 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | |||||||| || ||||| || || || || | |||||||| || | | ||| | Sbjct 6392 CGACCATCTTCCAGCTGCTTT--CCAGCAAAAATTAATCTCTGCTGATCTGGGGGGATGC 6335 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTT 152058 |||| || || || || ||| |||||| |||| | | |||| ||| |||||||| Sbjct 6334 CTTCTTTATCCTGGATCTTTGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCTACTT 6278 Query 152059 CAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || || ||||| || | ||||||||||| | |||||| Sbjct 6277 CAAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCAT 6232 >seq22615 Length=203576 Score = 105 bits (116), Expect = 2e-17 Identities = 161/226 (71%), Gaps = 10/226 (4%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| | || || || || || || ||||||||||| || | | || Sbjct 193090 CTGAGACGAAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTA 193031 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | ||||||||| || ||||| || || ||||| | |||||||| || | | ||| | Sbjct 193030 CGCCCATCTTCCAGCTGCTTT--CCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATGC 192973 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTT 152058 |||| || || || || ||| |||||| |||| | | |||| ||| ||| |||| Sbjct 192972 CTTCTTTATCCTGGATCTTTGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACTT 192916 Query 152059 CAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || ||||| || || | |||||||| |||| |||||| Sbjct 192915 CAAGGGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 192870 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/191 (71%), Gaps = 10/191 (5%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| | |||||||| || ||||| ||||||||||| || | | || Sbjct 192862 CTGAGACGAAGGACTAAGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCAGACAGGGTG 192803 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | |||||||| || ||||| ||||| || || | ||||||||||| | | ||| | Sbjct 192802 CGACCATCTTCCAGCTGCTTT--CCGGCAAAAATCAATCTCTGCTGGTCTGGGGGGATGC 192745 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTT 152058 |||| || || || || ||| |||||| | || | | | || ||| ||||||| Sbjct 192744 CTTCTTTATCCTGGATCTTTGCCTTGACATTTTCAATGGTATC---ACTGGGTTCTACTT 192688 Query 152059 CAAGAGTAATA 152069 |||| || ||| Sbjct 192687 CAAGGGTGATA 192677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153288984522554