Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17]
35,974 sequences; 3,174,693,010 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq22597 140 7e-28
seq7240 134 3e-26
seq22615 105 2e-17
>seq22597
Length=1249212
Score = 140 bits (154), Expect = 7e-28
Identities = 166/224 (74%), Gaps = 6/224 (3%)
Strand=Plus/Minus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
||||| | ||||| |||||||| || || ||||| ||||||||||| || | | ||
Sbjct 1182825 CTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTA 1182766
Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
| |||||||| || || || || |||||||||||||||||||| | | ||| |||
Sbjct 1182765 CGACCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCT 1182706
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060
|| || ||||| ||||| ||||||| |||| | | || ||| ||| |||||
Sbjct 1182705 TCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATAGTATC---ACTGGGCTCCACTTCT 1182649
Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || |||||||| || |||||||| |||| ||||||
Sbjct 1182648 AGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1182605
Score = 131 bits (144), Expect = 4e-25
Identities = 164/224 (73%), Gaps = 6/224 (3%)
Strand=Plus/Minus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
||||| | ||||| |||||||| || || ||||| ||||||||||| || | | ||
Sbjct 1181772 CTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTA 1181713
Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
| |||||||| || || || || ||||| |||||||||||||| | | ||| ||
Sbjct 1181712 CGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCC 1181653
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060
|| || ||||| ||||| ||||||| |||| | | || ||| ||| |||||
Sbjct 1181652 TCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATAGTATC---ACTGGGCTCCACTTCC 1181596
Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || |||||||| || |||||||| |||| ||||||
Sbjct 1181595 AGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1181552
Score = 109 bits (120), Expect = 1e-18
Identities = 160/225 (71%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
||||| | ||||| |||||||| || || ||||| ||||||||||| || | | ||
Sbjct 1181544 CTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTA 1181485
Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
| || ||||| || || || || ||||| |||||||||||||| | | ||| ||
Sbjct 1181484 CGACCGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCC 1181425
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060
|| || ||||| ||||| ||||||| |||| | | || ||| ||| || ||
Sbjct 1181424 TCTTTGTCTTGGATTTTGGTTTTGACATTCTCAATAGTATC---ACTGGGCTCCACCTCC 1181368
Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105
|| || || || || || || || || ||||| |||| |||||||
Sbjct 1181367 AGGGTGATGGTCTTCCCTGTCAGGGTTTTCACAAAGATCTGCATT 1181323
Score = 89.7 bits (98), Expect = 1e-12
Identities = 108/146 (74%), Gaps = 6/146 (4%)
Strand=Plus/Minus
Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021
|| || || ||||| |||||||||||||| | | ||| || || || ||||| |||||
Sbjct 1181922 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTGTCTTGGATTTTG 1181863
Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCC 152078
||||||| |||| | |||| ||| ||| || || || || || ||||||||
Sbjct 1181862 GCTTTGACATTCTCAATAGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCT 1181806
Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || |||||||| |||| ||||||
Sbjct 1181805 GTCAGGGTCTTCACAAAGATCTGCAT 1181780
>seq7240
Length=45712
Score = 134 bits (148), Expect = 3e-26
Identities = 168/227 (74%), Gaps = 10/227 (4%)
Strand=Plus/Minus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
||||| | ||||| | || || || || ||||| ||||||||||| || | || |||
Sbjct 6224 CTGAGACGAAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTT 6165
Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001
| ||||||||| || ||||| ||||| ||||| | ||||||||||| | | || |
Sbjct 6164 CGCCCATCTTCCAGCTGCTTT--CCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGC 6107
Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTT 152058
||||||| || |||||||| |||||| |||| | | |||| ||| ||| ||||
Sbjct 6106 CTTCCTTGTCCTGAATTTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACTT 6050
Query 152059 CAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105
|||| || || || ||||| || | |||||||| |||| |||||||
Sbjct 6049 CAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATT 6003
Score = 116 bits (128), Expect = 9e-21
Identities = 158/217 (73%), Gaps = 10/217 (5%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| | ||||| || || ||||| ||||||||||| || | | || | |||||||
Sbjct 7287 AGGACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCT 7228
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| || || ||||| | ||||||||||| | | || ||||| || |
Sbjct 7227 TCCAGCTGCTTT--CCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCTTTGT 7170
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAA 152067
|||||||||| |||||| |||| | | |||| ||| ||| |||||||| || |
Sbjct 7169 CTTGAATTTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACTTCAAGGGTGA 7113
Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| ||||| || || | || ||||| |||| ||||||
Sbjct 7112 TGGTTTTACCGGTCAAGGTTTTCACAAAGATCTGCAT 7076
Score = 105 bits (116), Expect = 2e-17
Identities = 161/226 (71%), Gaps = 10/226 (4%)
Strand=Plus/Minus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
||||| | ||||| | || || ||||| || || ||||||||||| || | | ||
Sbjct 6452 CTGAGACGAAGGACCAAGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTG 6393
Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001
| |||||||| || ||||| || || || || | |||||||| || | | ||| |
Sbjct 6392 CGACCATCTTCCAGCTGCTTT--CCAGCAAAAATTAATCTCTGCTGATCTGGGGGGATGC 6335
Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTT 152058
|||| || || || || ||| |||||| |||| | | |||| ||| ||||||||
Sbjct 6334 CTTCTTTATCCTGGATCTTTGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCTACTT 6278
Query 152059 CAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|||| || || || ||||| || | ||||||||||| | ||||||
Sbjct 6277 CAAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCAT 6232
>seq22615
Length=203576
Score = 105 bits (116), Expect = 2e-17
Identities = 161/226 (71%), Gaps = 10/226 (4%)
Strand=Plus/Minus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
||||| | ||||| | || || || || || || ||||||||||| || | | ||
Sbjct 193090 CTGAGACGAAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTA 193031
Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001
| ||||||||| || ||||| || || ||||| | |||||||| || | | ||| |
Sbjct 193030 CGCCCATCTTCCAGCTGCTTT--CCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATGC 192973
Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTT 152058
|||| || || || || ||| |||||| |||| | | |||| ||| ||| ||||
Sbjct 192972 CTTCTTTATCCTGGATCTTTGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACTT 192916
Query 152059 CAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|||| || || ||||| || || | |||||||| |||| ||||||
Sbjct 192915 CAAGGGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 192870
Score = 84.2 bits (92), Expect = 5e-11
Identities = 135/191 (71%), Gaps = 10/191 (5%)
Strand=Plus/Minus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
||||| | ||||| | |||||||| || ||||| ||||||||||| || | | ||
Sbjct 192862 CTGAGACGAAGGACTAAGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCAGACAGGGTG 192803
Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001
| |||||||| || ||||| ||||| || || | ||||||||||| | | ||| |
Sbjct 192802 CGACCATCTTCCAGCTGCTTT--CCGGCAAAAATCAATCTCTGCTGGTCTGGGGGGATGC 192745
Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTT 152058
|||| || || || || ||| |||||| | || | | | || ||| |||||||
Sbjct 192744 CTTCTTTATCCTGGATCTTTGCCTTGACATTTTCAATGGTATC---ACTGGGTTCTACTT 192688
Query 152059 CAAGAGTAATA 152069
|||| || |||
Sbjct 192687 CAAGGGTGATA 192677
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153288984522554
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