Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq22347 129 8e-25 seq891 87.8 3e-12 >seq22347 Length=2972275 Score = 129 bits (142), Expect = 8e-25 Identities = 164/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 9254 TGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACA 9313 |||||||||||| |||||| ||| |||||| |||||||| ||||| || | || |||| Sbjct 2057460 TGGTCTGGAACAATTGCTCATCATCCCATTCAGGATGTTCCTGTTTAAGGATGTCACACA 2057519 Query 9314 CCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAA 9373 | | ||| || || | ||||| || || ||||||||||| | || || |||||||||| Sbjct 2057520 CTCGGTTATGCTCTCGAAGCCATATTGTAGCGTACATCATTAAACCTGGAACCAGGCCAA 2057579 Query 9374 AAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGT 9433 | | |||||||| ||||| | || | || || || | || ||||||||||| | Sbjct 2057580 ATACTTCTTGACCAACAGCAAATTTCAGATGCTCAGGAACATGAGGTGGATAGATCATTT 2057639 Query 9434 GCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9479 |||| ||||| || | || ||||| | ||| || ||||| Sbjct 2057640 CTGCCTGAGTATCTTTCACTAAAGGTGGATATACTTCTCCATCAAT 2057685 Score = 120 bits (132), Expect = 4e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 |||||||||||||| ||| |||| |||||||| ||||||| ||| || |||| Sbjct 2058981 CTTACCCCATGTCCTAGTGCTTTTGTGAAGGCTGGGCCTCTGTGATGATCTGTTTTAAAG 2059040 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 |||||||| ||||||||||| |||| || |||||||| | || ||||| ||||| || Sbjct 2059041 AACTGGTGAGTGAAATGTTGAGCAAAGAATGCAAACATCATATTTGTGCCTTGGGGGTCA 2059100 Query 9770 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTTT 9829 ||| | || | || | |||||| |||||||||||| | | | || || || | | Sbjct 2059101 GGAATAAACTTTCTTCTCAGAAGACATTTTTCCACAACTTCTTTGGATTCAGGAAGTTGT 2059160 Query 9830 GTTTTACCT 9838 |||||||| Sbjct 2059161 TTTTTACCT 2059169 >seq891 Length=45060 Score = 87.8 bits (96), Expect = 3e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 8372 TCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGG 8431 || || || || ||||| |||||||||||| | || || || ||| |||| ||| || Sbjct 15779 TCACCACCAAATGTGCTTGGCTTCCAGTACTCAGGAGAACATATGGGGTTCCCCAACAGC 15838 Query 8432 CCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8491 || ||||||||||| || ||||| | ||| | |||||||| || ||||| | | || Sbjct 15839 CCCTTGAGGGAGAAGGGGGCCCCAATCTCCACCATGCTCTCTCCAAAGATAGAATCAGGC 15898 Query 8492 CGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGG 8551 | | || || | | || || | || | ||||| ||| || | |||||| || || Sbjct 15899 AGAGATTTCTCTAGAAGCAAGCCTGGATAGAACTCCAAAGCATCAATGTCTCCATATAGT 15958 Query 8552 GCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || ||||| || | ||| ||| |||||| Sbjct 15959 TCCTCCAGTTCTGCTGATTTCTGCTTCTCTCCT 15991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716554438424960