Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq22597 141 2e-28 seq7240 134 3e-26 seq22615 116 9e-21 seq7502 86.0 2e-11 >seq22597 Length=1249212 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| || ||||| || ||| Sbjct 1182608 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTAGAAGTGGA--GCCCAGTG 1182665 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || ||||| |||||| || || || ||||||||||| |||||||| ||||||| Sbjct 1182666 ATACTATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATCCCTCCTGACCAGC 1182725 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | |||||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 1182726 AGAGGCTTATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAACA 1182785 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| |||||||| || || ||||| || || | |||||| Sbjct 1182786 TCCAGAAAGAATCCACCCTTCATCTGGTCCTGCGTCTCAGA 1182826 >seq7240 Length=45712 Score = 134 bits (148), Expect = 3e-26 Identities = 158/208 (76%), Gaps = 7/208 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || | || || || || |||||||| || ||||| || ||| Sbjct 6007 CAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAAGTGGA--GCCCAGTG 6064 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| || ||||||||||| ||||| || || || ||||||| Sbjct 6065 ACACCATTGAGAATGTCAAGGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGACCAGC 6124 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 | || | ||||| |||||||| ||||| |||||||| | || |||| | || || ||| Sbjct 6125 AGAGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGAAC-CTTGTCTGACTACAAC 6183 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128 |||| |||||||| || ||||| |||| Sbjct 6184 ATCCAGAAAGAATCCACCCTGCA-CTTG 6210 Score = 134 bits (148), Expect = 3e-26 Identities = 156/207 (75%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| | || || ||||| |||||||| || ||||| || ||| Sbjct 7079 CAGATCTTTGTGAAAACCTTGACCGGTAAAACCATCACCCTTGAAGTGGA--GCCCAGTG 7136 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| || ||||| ||||||||||| || || || ||||||| Sbjct 7137 ACACCATTGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGCATTCCCCCAGACCAGC 7196 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | ||||| || ||||| ||||| |||||||| | || || | || || ||| Sbjct 7197 AGAGATTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAACA 7256 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| |||||||| || || || |||| Sbjct 7257 TCCAGAAAGAATCCACCCTTCA-CTTG 7282 Score = 131 bits (144), Expect = 4e-25 Identities = 155/207 (75%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || ||||||||||| || | || || || || |||||||| || || | ||| || | Sbjct 6235 CAGATTTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTTGAAGT--AGAGCCCAGTG 6292 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| |||||| ||||| |||||||| ||||| || || |||| Sbjct 6293 ACACCATTGAGAATGTCAAGGCAAAGATCCAGGATAAAGAAGGCATCCCCCCAGATCAGC 6352 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | || || || ||||| ||||| |||||||| | || || | || || ||| Sbjct 6353 AGAGATTAATTTTTGCTGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAACA 6412 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || ||||| || ||||| |||| Sbjct 6413 TCCAGAAGGAATCTACCCTGCA-CTTG 6438 >seq22615 Length=203576 Score = 116 bits (128), Expect = 9e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 177957 ATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGAC 178016 |||||||| || || ||| | || ||||| || || ||||| |||||| ||||| Sbjct 192678 ATCACCCTTGAAGTAGAACCCAGTGATACCATTGAAAATGTCAAGGCAAAGATCCAGGAT 192737 Query 178017 AAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGAT 178076 |||||||| ||||| || |||||||| || | || || |||||||| ||||| |||||| Sbjct 192738 AAAGAAGGCATCCCCCCAGACCAGCAGAGATTGATTTTTGCCGGAAAGCAGCTGGAAGAT 192797 Query 178077 GGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123 || | || || | || || ||| |||| ||||||||||| || || Sbjct 192798 GGTCGCACCCTGTCTGACTACAACATCCAGAAAGAATCAACTCTTCA 192844 >seq7502 Length=209603 Score = 86.0 bits (94), Expect = 2e-11 Identities = 150/211 (71%), Gaps = 12/211 (6%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||||| | | || || ||||| ||||| || || | || || ||| Sbjct 174781 CAGATCTTTGTGAAAATTTTGACTGGTAAAACCATCACTCTTGAAGCAGA--GCCCAGTG 174838 Query 177982 ACACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| | ||||| ||||| || ||| || || ||||||||||| || ||||| || || Sbjct 174839 ACACCCTTGAGAATGTCAAGACCAAA-ATGCAAGACAAAGAAGGCATTCCTCCAGATGAG 174897 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || | ||||| || |||| ||| | ||| |||| | || || || || ||| Sbjct 174898 CAGAGA-TAATCTTTGCTAGAAAGCAGTTGGAACATGGTGGCACCCT----GACTACAAC 174952 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTT 178131 |||| |||||| | || ||| | |||| || Sbjct 174953 ATCCAGAAAGAACCCACCCTGTA-CTTGGTT 174982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203176379976956