Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq22597 109 5e-19 seq7240 87.8 2e-12 >seq22597 Length=1249212 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||||| || ||| || ||||| ||||| ||||| || ||||| || Sbjct 1181769 AGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGA 1181710 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||| ||||| | || | || ||| Sbjct 1181709 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCT 1181650 Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | || |||| |||| || | | ||| || || | |||||| |||| || Sbjct 1181649 TTGT-CTTGGATTTTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCACTTCCAGGGT 1181591 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || |||||||| ||||| || || |||||||| Sbjct 1181590 GATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1181552 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||||| || ||| || ||||| ||||| ||||| || ||||| || Sbjct 1181541 AGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGA 1181482 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || ||||||||||| || || || || | ||| ||||| | || | || ||| Sbjct 1181481 CCGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCT 1181422 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| |||||| || | | | ||| || || | ||||||||||| || Sbjct 1181421 TTGTCTTGGATTTTGGTTTTGACATTCTCAATAGTATCACTGGGCTCCACCTCCAGGGTG 1181362 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| || || || || |||||||| Sbjct 1181361 ATGGTCTTCCCTGTCAGGGTTTTCACAAAGATCTGCAT 1181324 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||||| || ||| || ||||| ||||| ||||| || ||||| || Sbjct 1182822 AGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGA 1182763 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||| ||||| | || | || || Sbjct 1182762 CCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCT 1182703 Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | || |||| |||| || | | ||| || || | |||||| || | || Sbjct 1182702 TTGT-CTTGGATTTTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCACTTCTAGGGT 1182644 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || |||||||| ||||| || || |||||||| Sbjct 1182643 GATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1182605 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 41706 CGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCT 41765 |||| || ||||||||||| || || || || | ||| ||||| | || | || ||| | Sbjct 1181936 CGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTT 1181877 Query 41766 TGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||| |||||| |||| || || |||||| || | ||||||||||| || Sbjct 1181876 TGTCTTGGATTTTG-GCTTTGACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTG 1181818 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || ||||| ||||| || || |||||||| Sbjct 1181817 ATGGTTTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1181780 >seq7240 Length=45712 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||| ||||| || |||||||| ||||| ||||| || |||||||| Sbjct 6449 AGACGAAGGACCAAGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGA 6390 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| || || || || | | ||| || || | ||| | || || Sbjct 6389 CCATCTTCCAGCTGCTTTCCAGCAAAAATTAATCTCTGCTGATCTGGGGGGATGCCTTCT 6330 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| ||| ||| | | | ||||| || | ||| || || | || Sbjct 6329 TTATCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTG 6270 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| ||||| |||||||||||||| Sbjct 6269 ATGGTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCAT 6232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462096113448800