Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1 113 3e-20 >seq1 Length=47594283 Score = 113 bits (124), Expect = 3e-20 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||||||||| ||||||| || | |||||||||| |||| ||||| || | |||||||| Sbjct 12103592 CTTTAGTTCTCTGCTGAGCACTATATTAATTCTGTCTTTCAAAGGTCGACTTTTCTCAGG 12103533 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||| ||||| |||||||| ||||| | ||| |||||| ||| Sbjct 12103532 AATGGAGAACCAGGTCTTCTTACCCATTATCACCAGATTTTGTTTACCTG 12103483 Score = 102 bits (112), Expect = 6e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| |||||||||| ||||| |||||||||||| ||||||| |||||||||||||| Sbjct 12115595 AAGTTTATATTTCTCTAAATCAATTTCTGGAAAAAATGTGTCACTTTCAAAGTCTTGCAA 12115536 Query 4116 GATCCTAGTCACAAACAGT 4134 || ||||||||||| ||| Sbjct 12115535 AATTCTAGTCACAAATAGT 12115517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360369972176654