Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq152305 129 7e-25 seq152124 105 8e-18 seq7 86.0 7e-12 >seq152305 Length=463424 Score = 129 bits (142), Expect = 7e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||||||||| || |||| ||| || || || | ||||| ||||| ||||| |||||| Sbjct 101676 AGGCCCGTGATATGTGCGATCATATATGTGAGTAATGAGTAACTGGCGATGTTAAAGGGC 101735 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || || || |||||||| || || | ||||||||||||||| |||||||| || | | Sbjct 101736 ACTCCGAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAAGAGAGCTCACCATTCAAC 101795 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||||||||||| || ||||| || ||||| ||||| Sbjct 101796 ACATAGAACTGGCAGAGAGCATGGCAAGGGGGCAGAGCCAT 101836 >seq152124 Length=6934412 Score = 105 bits (116), Expect = 8e-18 Identities = 450/698 (64%), Gaps = 21/698 (3%) Strand=Plus/Plus Query 9454 CTAGCAGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGC 9513 || ||| | ||| | | ||| | ||||| || |||||| | | ||| || ||||| Sbjct 3899690 CTGGCAACCCAGTTACTGCCCCCGCTGTACTCCCTGGTGTTTATAGTGGGGCTGGTGGGC 3899749 Query 9514 AATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATG 9573 || || | || | | | || |||| | ||||| || | ||| || | | || ||||| Sbjct 3899750 AACGTCGTGGTAGCGCTGATCCTCATTAAATACAAGAGGCTCAGAATCGTGACCAACATC 3899809 Query 9574 TTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATG 9633 | || | |||||||| | ||||| ||||| || ||||| || | ||||||||||| Sbjct 3899810 TACCTCCTCAACTTGGCGTTTTCTGATTTGCTTTTCCTTTTCACCCTTCCATTTTGGATT 3899869 Query 9634 CACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGG 9693 ||| | || | || | || ||| || || | |||| |||| ||| | | Sbjct 3899870 CAC---ACTGAAGTGAAAAGCGAGTGGGTCTTCGGAAATTCCATGTGCAAATTTGTTTCC 3899926 Query 9694 GGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGAC 9753 || | | ||||||| || |||||| || |||| | ||| |||| | || || || Sbjct 3899927 GGGCTCTATTACATGGGCCTCTACAGCGAGATCTTCTTCATAGTCCTCTTGACGGTCGAT 3899986 Query 9754 AGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCTGTGGC 9813 |||| || || | ||| | || || ||||| | || || || | || |||| Sbjct 3899987 CGGTACCTGGCCATCGTCCACGCCGTGTTCGCTTTACAAGTCAGGACGGTCAACTTTGGC 3900046 Query 9814 ATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTC 9873 || | || ||| |||||| ||||||||||| | |||||||| |||| || Sbjct 3900047 ATCATGACAAGTGCCGTCACCTGGGGATTGGCAGGGTTGGCGGCCCTCCCTTCATTTGTC 3900106 Query 9874 TTTCATGGACA-CCAAGATGACAATGGTAGGGTTCAGTGTG-ATCC---TTACTACCCAG 9928 |||| | ||| | ||| | | | || | || || | || || ||||| Sbjct 3900107 -TTCA-GCACATCTCAGAGAAGCCTCG-AGAATCACGTATGCAGCCCGGTT--TACCC-- 3900159 Query 9929 AGATGTCTA--CAAATGTTTGGAGGCGCGCCC--ACGTTGCAAAGGTGATTATGTTAAGT 9984 |||| | | || | |||| || | || || || ||| ||| | || | Sbjct 3900160 CGATGCCAAAGCAGAGAACTGGAAGCACTTCCGAACCCTGAAAA--TGAACCTCTTGGGA 3900217 Query 9985 CTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTG 10044 || ||||| ||| || || |||||| |||||| || | |||||||| || ||| || Sbjct 3900218 CTTATTTTTCCTATGATCGTTATGGTTGTCTGTTATGCGGGAATTATCAAAAAGCTGCTG 3900277 Query 10045 AGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCC 10104 | ||| | |||| ||||| ||||| || |||| || ||||| || ||| | | | Sbjct 3900278 AAATGCCGGAATGAGAAAAAGTATAAGGCAGTCCGGCTGATTTTTGTAATAATGATAGTC 3900337 Query 10105 TATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCT 10142 | ||| |||| ||||| ||||| ||| ||||||| || Sbjct 3900338 TTCTTTCTTTTCTGGACCCCCTATAACCTTGTTCTTCT 3900375 Score = 105 bits (116), Expect = 8e-18 Identities = 450/698 (64%), Gaps = 21/698 (3%) Strand=Plus/Plus Query 176340 CTAGCAGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGC 176399 || ||| | ||| | | ||| | ||||| || |||||| | | ||| || ||||| Sbjct 3899690 CTGGCAACCCAGTTACTGCCCCCGCTGTACTCCCTGGTGTTTATAGTGGGGCTGGTGGGC 3899749 Query 176400 AATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATG 176459 || || | || | | | || |||| | ||||| || | ||| || | | || ||||| Sbjct 3899750 AACGTCGTGGTAGCGCTGATCCTCATTAAATACAAGAGGCTCAGAATCGTGACCAACATC 3899809 Query 176460 TTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATG 176519 | || | |||||||| | ||||| ||||| || ||||| || | ||||||||||| Sbjct 3899810 TACCTCCTCAACTTGGCGTTTTCTGATTTGCTTTTCCTTTTCACCCTTCCATTTTGGATT 3899869 Query 176520 CACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGG 176579 ||| | || | || | || ||| || || | |||| |||| ||| | | Sbjct 3899870 CAC---ACTGAAGTGAAAAGCGAGTGGGTCTTCGGAAATTCCATGTGCAAATTTGTTTCC 3899926 Query 176580 GGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGAC 176639 || | | ||||||| || |||||| || |||| | ||| |||| | || || || Sbjct 3899927 GGGCTCTATTACATGGGCCTCTACAGCGAGATCTTCTTCATAGTCCTCTTGACGGTCGAT 3899986 Query 176640 AGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCTGTGGC 176699 |||| || || | ||| | || || ||||| | || || || | || |||| Sbjct 3899987 CGGTACCTGGCCATCGTCCACGCCGTGTTCGCTTTACAAGTCAGGACGGTCAACTTTGGC 3900046 Query 176700 ATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTC 176759 || | || ||| |||||| ||||||||||| | |||||||| |||| || Sbjct 3900047 ATCATGACAAGTGCCGTCACCTGGGGATTGGCAGGGTTGGCGGCCCTCCCTTCATTTGTC 3900106 Query 176760 TTTCATGGACA-CCAAGATGACAATGGTAGGGTTCAGTGTG-ATCC---TTACTACCCAG 176814 |||| | ||| | ||| | | | || | || || | || || ||||| Sbjct 3900107 -TTCA-GCACATCTCAGAGAAGCCTCG-AGAATCACGTATGCAGCCCGGTT--TACCC-- 3900159 Query 176815 AGATGTCTA--CAAATGTTTGGAGGCGCGCCC--ACGTTGCAAAGGTGATTATGTTAAGT 176870 |||| | | || | |||| || | || || || ||| ||| | || | Sbjct 3900160 CGATGCCAAAGCAGAGAACTGGAAGCACTTCCGAACCCTGAAAA--TGAACCTCTTGGGA 3900217 Query 176871 CTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTG 176930 || ||||| ||| || || |||||| |||||| || | |||||||| || ||| || Sbjct 3900218 CTTATTTTTCCTATGATCGTTATGGTTGTCTGTTATGCGGGAATTATCAAAAAGCTGCTG 3900277 Query 176931 AGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCC 176990 | ||| | |||| ||||| ||||| || |||| || ||||| || ||| | | | Sbjct 3900278 AAATGCCGGAATGAGAAAAAGTATAAGGCAGTCCGGCTGATTTTTGTAATAATGATAGTC 3900337 Query 176991 TATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCT 177028 | ||| |||| ||||| ||||| ||| ||||||| || Sbjct 3900338 TTCTTTCTTTTCTGGACCCCCTATAACCTTGTTCTTCT 3900375 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 176358 CCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATT 176417 ||| | |||||| || |||||| | | || || |||||||| || | || ||| | Sbjct 3878463 CCCCCACTGTATTCCCTGGTGTTTATAGTGGGTGTGGTGGGCAATTTCATGGTCGTGCTG 3878404 Query 176418 ATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCA 176477 || || | | ||||| || | ||| || | | || ||||| | || | | |||||| Sbjct 3878403 ATCCTCGTTAAATACAAGAGGCTCATAACCATGACCAACATCTACCTCCTCAGCTTGGCG 3878344 Query 176478 ATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACT 176523 | ||||| ||||| |||||||| || || ||||||||||| |||| Sbjct 3878343 TTTTCTGATTTGCTTTTTCTTTTCACCTTTCCATTTTGGATTCACT 3878298 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 9472 CCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATT 9531 ||| | |||||| || |||||| | | || || |||||||| || | || ||| | Sbjct 3878463 CCCCCACTGTATTCCCTGGTGTTTATAGTGGGTGTGGTGGGCAATTTCATGGTCGTGCTG 3878404 Query 9532 ATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCA 9591 || || | | ||||| || | ||| || | | || ||||| | || | | |||||| Sbjct 3878403 ATCCTCGTTAAATACAAGAGGCTCATAACCATGACCAACATCTACCTCCTCAGCTTGGCG 3878344 Query 9592 ATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACT 9637 | ||||| ||||| |||||||| || || ||||||||||| |||| Sbjct 3878343 TTTTCTGATTTGCTTTTTCTTTTCACCTTTCCATTTTGGATTCACT 3878298 >seq7 Length=40039088 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 138169 GCCTGGGGCATCACCTCCTCCAGGTAAAACTGGATCATCTCAGACAGGGCCTGGCAGCCC 138228 |||| |||||||||||||||||| |||||| ||||||| || ||| ||||||||||||| Sbjct 38153992 GCCTTGGGCATCACCTCCTCCAGATAAAACCGGATCATATCCAACATGGCCTGGCAGCCC 38153933 Query 138229 AGGTA 138233 ||||| Sbjct 38153932 AGGTA 38153928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588600472102160