Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06-
17] 200,154 sequences; 1,995,607,322 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq1 100 3e-16
seq152438 93.3 4e-14
>seq1
Length=47594283
Score = 100 bits (110), Expect = 3e-16
Identities = 81/98 (83%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 15928 TGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCC 15987
|||||| ||| |||| | |||||||| | |||||||| ||||| ||||||||||| ||
Sbjct 29600054 TGACATTACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCAAAAAAATTTGTTTTCCC 29600113
Query 15988 TTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025
||| ||||| || ||||||||||| ||||| || ||||
Sbjct 29600114 TTCCAATGAGATGTTTTCCATAAAGTCAAATGGGTTTT 29600151
Score = 93.3 bits (102), Expect = 4e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
||||| ||||| || | || || ||||| || || || ||||||| |||| ||| ||
Sbjct 29601952 TCGTCTCTACTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATTAACCCTCTTTTCTTG 29602011
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| ||| ||||| | ||||| |||||||||||||| || || || || || ||||| ||
Sbjct 29602012 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCCTCTACCGCTGCAAAGGCT 29602071
Query 16379 ACCAATCGCTCACC 16392
|| | ||||||||
Sbjct 29602072 ACAACACGCTCACC 29602085
>seq152438
Length=1158950
Score = 93.3 bits (102), Expect = 4e-14
Identities = 82/101 (81%), Gaps = 1/101 (1%)
Strand=Plus/Minus
Query 16487 TTTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATA 16546
||||||| | |||| ||||||||||||||||| ||||| |||||||| || |||| |
Sbjct 117344 TTTTCTTGGG-ATCTTTGATATAAGTATCTATTAGCAAACTGTACATTTCCGAGTGAACA 117286
Query 16547 TTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTC 16587
||||| || |||||||| ||||||||||| | ||||||
Sbjct 117285 TTCTCGATAAGAATCTGAAAGCCATAAAAGCAGCGAGCTTC 117245
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15884 CTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATT 15943
||||||||||| ||| | | || ||||| ||| || | | |||||| |||| |
Sbjct 134886 CTTTAAAAATCTGCATCCAAGGTGAAGACATTGTCTGTTGTTTCTGACATTACTGCAAAA 134827
Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003
||||| ||| |||| || |||||||||||||| || |||||||| ||||||||
Sbjct 134826 CGCTGATACTCAGAGACTCGTTTCTCAAAGAAATTTGTCTTCCCTTCTAAAGAAATATTC 134767
Query 16004 TCCATAAAATCAAAAGGATT 16023
||||| || ||||| |||||
Sbjct 134766 TCCATGAAGTCAAATGGATT 134747
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461354829664400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |