Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1 100 3e-16 seq152438 93.3 4e-14 >seq1 Length=47594283 Score = 100 bits (110), Expect = 3e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 15928 TGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCC 15987 |||||| ||| |||| | |||||||| | |||||||| ||||| ||||||||||| || Sbjct 29600054 TGACATTACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCAAAAAAATTTGTTTTCCC 29600113 Query 15988 TTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 ||| ||||| || ||||||||||| ||||| || |||| Sbjct 29600114 TTCCAATGAGATGTTTTCCATAAAGTCAAATGGGTTTT 29600151 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 ||||| ||||| || | || || ||||| || || || ||||||| |||| ||| || Sbjct 29601952 TCGTCTCTACTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATTAACCCTCTTTTCTTG 29602011 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || || || || || ||||| || Sbjct 29602012 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCCTCTACCGCTGCAAAGGCT 29602071 Query 16379 ACCAATCGCTCACC 16392 || | |||||||| Sbjct 29602072 ACAACACGCTCACC 29602085 >seq152438 Length=1158950 Score = 93.3 bits (102), Expect = 4e-14 Identities = 82/101 (81%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 16487 TTTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATA 16546 ||||||| | |||| ||||||||||||||||| ||||| |||||||| || |||| | Sbjct 117344 TTTTCTTGGG-ATCTTTGATATAAGTATCTATTAGCAAACTGTACATTTCCGAGTGAACA 117286 Query 16547 TTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTC 16587 ||||| || |||||||| ||||||||||| | |||||| Sbjct 117285 TTCTCGATAAGAATCTGAAAGCCATAAAAGCAGCGAGCTTC 117245 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15884 CTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATT 15943 ||||||||||| ||| | | || ||||| ||| || | | |||||| |||| | Sbjct 134886 CTTTAAAAATCTGCATCCAAGGTGAAGACATTGTCTGTTGTTTCTGACATTACTGCAAAA 134827 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||| ||| |||| || |||||||||||||| || |||||||| |||||||| Sbjct 134826 CGCTGATACTCAGAGACTCGTTTCTCAAAGAAATTTGTCTTCCCTTCTAAAGAAATATTC 134767 Query 16004 TCCATAAAATCAAAAGGATT 16023 ||||| || ||||| ||||| Sbjct 134766 TCCATGAAGTCAAATGGATT 134747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461354829664400