Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq157043 700 0.0 seq152207 113 3e-20 >seq157043 Length=30550 Score = 700 bits (776), Expect = 0.0 Identities = 842/1130 (75%), Gaps = 17/1130 (2%) Strand=Plus/Plus Query 107500 TGAAGCTGCCAGCAAAGAGATCC-ATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAA 107558 |||||||||| | ||| ||| |||||||||||| ||||| ||||||| |||| Sbjct 21517 TGAAGCTGCCTCCCCAGA-ATCGGATCAACTGTTCTCAGATCATCAAAGGGGAC-AGGAG 21574 Query 107559 -GCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCAC 107617 || ||| ||||| || | ||||||| ||||| ||| || ||||| Sbjct 21575 TGCCCTGGAGGAGGCCAGTTTACGGAGTCTGGAAGCGAAGAG-----GGTACCC-CTCAC 21628 Query 107618 TGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCG-CTTCAAGGCCCAAAGGAAGT 107676 | ||| | |||||| |||| |||| |||||| || | ||||||| | | | | | Sbjct 21629 AGAAACCCAGTACCTCCACATGACCAAAGACTGC-AGTGACTTCAAGAACGAGCGAAGAT 21687 Query 107677 TCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGG 107736 | || |||||||| ||||| || || || |||| ||||| ||||| || |||||| Sbjct 21688 TTATCCAGTTCCCCCTGAGCAAGGAGGAAGAGAACTTTCCCATCGCCTATTCTATGGTGA 21747 Query 107737 TCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACA 107796 |||| ||||||| || ||||||||| | || || | ||| | || |||||||||||| Sbjct 21748 TCCACCAGAAGATCGAGAACTTTGAAAGACTCCTCAGGGCCATCTACGCCCCTCAGAACG 21807 Query 107797 TATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCA 107856 | ||||| |||||| | || | |||||| || ||| |||| || ||||| |||| ||| | Sbjct 21808 TGTACTGCGTCCACATTGACGAGAAGTCTCCCGAGCCTTTTAAGGAGGCAGTCAGGGCGA 21867 Query 107857 TTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCT 107916 | | || |||||||| || |||||| |||||| ||| | || | ||||| || || | Sbjct 21868 TCACCTCGTGCTTCCCGAACGTCTTCGTGGCCACTAAACTCGTAGCCGTGGTCTACGCTT 21927 Query 107917 CCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGC 107976 |||||||| |||||||||| || || ||||| ||||||||| |||||| ||| | |||| Sbjct 21928 CCTGGTCCCGAGTGCAAGCGGATCTCAACTGCATGGAAGACCTGCTCCGGAGTCCGGTGC 21987 Query 107977 CATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGA 108036 | ||||||||| | | || || |||||||| ||||||||||| |||||||| || |||| Sbjct 21988 CTTGGAAGTACCTCTTAAACACCTGCGGGACGGACTTCCCCATCAAGACCAACGCTGAGA 22047 Query 108037 TGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTG 108096 |||| | | | || || | |||| || |||||||| |||||||| ||||| || || | Sbjct 22048 TGGTGCGGTCTCTGAAAGTTCTGAACGGGAAGAACAGCATGGAGTCGGAGGTGCCCTCGG 22107 Query 108097 AGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGAC--AGA-CACACTGTACCCTA 108153 | ||||| | || |||||| ||||||| |||| | ||| ||| |||| || | Sbjct 22108 CCTACAAAAGGAGCCGGTGGAAACACCGCTACATGGTGGCGAAGAACACGCTGTTCCAGA 22167 Query 108154 CCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATT 108213 | | | ||||| ||| || || || || | ||||||||||| || || ||||||| Sbjct 22168 TGAAGATGGAGAAGGGCCCCCCACCCGACAACGTGCCCATGTTCACCGGAAACGCCTATT 22227 Query 108214 TTGTGGCCT-CTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTG 108272 | ||||||| | ||| ||| ||||| ||| |||| || ||||| ||| || |||| Sbjct 22228 TCGTGGCCTGCAGGAG-CTTCGTCCAGCATCTCTTCGAGAACCCGCGGGCCCGAAAACTG 22286 Query 108273 GTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGT 108332 | || ||| ||| ||||| || ||||| ||||| ||||||||||||||||| ||||| Sbjct 22287 ATCGAGTGGACCAATGACACGTACAGCCCGGACGAGCACCTCTGGGCCACCCTGCAGCGG 22346 Query 108333 GCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACT 108392 | || |||||||| ||||| | ||| |||| ||||||| |||| ||| ||| ||| Sbjct 22347 GTGCCTTGGATGCCGGGCTCCATCCCTCACCACTCCAAGTACCACACCTCCGACCTGAAC 22406 Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCT 108452 ||||||||| |||| ||||||||| | |||||| ||||| ||| ||| |||||| || Sbjct 22407 GCCATCGCCCGGCTGGTCAAGTGGATGGGCCACGAAGGAGACGTCGGCAAGGGGGCACCC 22466 Query 108453 TATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTG 108512 || || |||||| | |||| ||| | | ||||| ||||||| ||||||||||| ||||| Sbjct 22467 TACGCCCCCTGCACGGGAACCCACCAGCGGGCCGTCTGCATCTACGGGGCCGGAGACCTC 22526 Query 108513 TACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGAT 108572 ||||||| |||||||| |||||||| |||| |||||||||||||| |||||| || Sbjct 22527 CACTGGATGCTCCAGAATCATCACCTGCTGGCCAACAAGTTTGACCCCCAGGTGGACGAC 22586 Query 108573 AACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622 |||| || |||||| | || || ||||| || || |||||| |||| || Sbjct 22587 AACGCGCTCCAGTGCCTGGAGGAATACCTGCGCCACAAGGCCGTCTACGG 22636 >seq152207 Length=3261333 Score = 113 bits (124), Expect = 3e-20 Identities = 233/343 (68%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || ||||| |||||| ||| || || |||||||| || || ||||| | | || Sbjct 3124457 CCCCTTAGTAAGGAAGAGGCAGAGTTTCCGATTGCCTATTCCATAGTGGTTTACCATAAA 3124516 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| || || ||| | || | || ||||| ||||| ||||| || Sbjct 3124517 ATTGAAATGCTTGACCGACTCCTGAGGTCCATCTACGCCCCCCAGAATTATTACTGCATC 3124576 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || || || || || | || || || || |||| ||| || ||| Sbjct 3124577 CATGTTGACAAAAAATCTCCGGAATCCTTTTTAGCTGCAGTGAAGGGAATTGCATCTTGC 3124636 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| |||||||||||| || ||| | ||| || || ||||| || ||| |||| Sbjct 3124637 TTCAACAATGTCTTCATTGCAAGTCAACTGGAGAGTGTTGTGTATGCATCGTGGAGCAGA 3124696 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 ||||| || ||||| ||||| ||| |||| | || |||| ||| | | ||||| | Sbjct 3124697 GTGCAGGCAGACCTCAACTGCATGAAAGA-TCTCTACAGA-AAGAGTACAAACTGGAAAT 3124754 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 | || | ||| || || | || |||||||| |||||||| Sbjct 3124755 ATTTGATCAATCTCTGTGGCATGGATTTCCCCATGAAGACCAA 3124797 Score = 86.0 bits (94), Expect = 4e-12 Identities = 193/284 (68%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG-C 108334 || |||| ||||| ||||| || ||||| ||| || | ||||||||| |||| | | Sbjct 3125048 GAGTGGGCTAAAGATACCTACAGTCCCGATGAATACTTATGGGCCACCATTCAAAGAATC 3125107 Query 108335 TCCGTGGATGCCTGG-CTCTGTTCCTAGCCACCCC-AAGTATCACATCTCAGACATGACT 108392 ||| | | || || | || ||| | ||| | | |||||| || | || || ||| Sbjct 3125108 CCCGAAGTTCCCGGGGCGCT-TTCTT--CCAGCACTAAGTATGACGTTTCGGATATGCAC 3125164 Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCT 108452 || |||||||| | || |||||||| ||| || |||||||| || |||||| || Sbjct 3125165 GCAGTCGCCAGGTTTGTGAAGTGGCATTACTTTGAAGGAGATGTTTCCAAGGGGGCTCCA 3125224 Query 108453 TATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTG 108512 ||| |||| ||| || || || | || | || | | || | || ||| || Sbjct 3125225 TATCCACCATGCCAGGGGATTCACGTCCGCTCCGTGTGTGTGTTTGGAGTGGGAGACTTG 3125284 Query 108513 TACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 |||||| || | ||| || ||| |||| || ||||||||||| Sbjct 3125285 AGCTGGATGCTACGGAAACACCACTTCTTTGCCAACAAGTTTGA 3125328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347419241142996