Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq152282 111 1e-19 seq171586 93.3 4e-14 seq152076 91.5 1e-13 >seq152282 Length=256244 Score = 111 bits (122), Expect = 1e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 |||| || ||| || |||||||| || ||||| || || || |||||||| || || | Sbjct 182805 CCACTTCATCTCTGCTGGTGTACTCGACGATTTCCGTGCACAGGTTGCTACATTTGATGG 182864 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 | |||| || ||||||||| || ||||| || | |||||||||||||||||||||| Sbjct 182865 TCCCCAGGTTCTGCTGGTTGCTCTTCCGATTACAAGTGTCCTTGTAGAGCATGTACGGCG 182924 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 | || ||||| ||| || || ||||| || ||||| Sbjct 182925 TTCCGGTCTCCGTCTGGGATTCTATGATGGCGTACCACA 182963 >seq171586 Length=8203 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/233 (69%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| ||||| || ||||| ||||| ||||| || |||||| | || || || Sbjct 2887 TCAAA-ATGCAGATTTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTAGAG 2829 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| | || | || || | ||| ||||||||||||| | || || Sbjct 2828 CCCAGTGACACAATTGAGAACGTGAAGGCCAAAATCCAGGACAAGGAAGGCATCCCTCCT 2769 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || || || ||||| ||| | ||||| | || | ||| Sbjct 2768 GACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGTCGCACACTCTCCGAC 2709 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || || || || ||||| || || || || | |||||||| || Sbjct 2708 TACAACATCCAGAAGGAGTCCACTCTGCACCTTGTCCTGCGCCTGAGGGGTGG 2656 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 2199 CATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCCAG 2140 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | ||| ||||||||| ||| | || |||||||| Sbjct 2139 TGACACAATTGAGAACGTGAAGGCCAAAATCCAGGACAAGGAGGGCATCCCTCCCGACCA 2080 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| | ||||| || | ||| || || Sbjct 2079 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACACTCTCCGACTACAA 2020 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || ||||| || || || || | |||||||| || Sbjct 2019 CATCCAGAAGGAGTCCACTCTGCACCTTGTCCTGCGCCTGAGGGGTGG 1972 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 2427 CATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTAGAGCCCAG 2368 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | ||| ||||||||| ||| | || |||||||| Sbjct 2367 TGACACAATTGAGAACGTGAAGGCCAAAATCCAGGACAAGGAGGGCATCCCTCCCGACCA 2308 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| | ||||| || | ||| || || Sbjct 2307 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACACTCTCCGACTACAA 2248 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || ||||| || || || || | |||||||| || Sbjct 2247 CATCCAGAAGGAGTCCACTCTGCACCTTGTCCTGCGCCTGAGGGGTGG 2200 >seq152076 Length=2538501 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 778308 CATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTAGAGCCCAG 778249 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | ||| ||||||||| ||| | || |||||||| Sbjct 778248 TGACACAATTGAGAACGTGAAGGCTAAAATCCAGGACAAGGAGGGCATCCCTCCCGACCA 778189 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| | ||||| || | ||| || || Sbjct 778188 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACACTCTCCGACTACAA 778129 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| || || || ||||| || || || || | |||||||| || Sbjct 778128 CATTCAGAAGGAGTCCACTCTGCACCTTGTCCTGCGCCTGAGGGGTGG 778081 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 778992 CATGCAGATCTTCGTGAAGACACTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCCAG 778933 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | ||| ||||||||| ||| | || |||||||| Sbjct 778932 TGACACAATTGAGAACGTGAAGGCCAAAATCCAGGACAAGGAGGGCATCCCTCCCGACCA 778873 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| | ||||| || | ||| || || Sbjct 778872 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACACTCTCCGACTACAA 778813 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| || || || ||||| || || || || | |||||||| || Sbjct 778812 CATTCAGAAGGAGTCCACTCTGCACCTTGTCCTGCGCCTGAGGGGTGG 778765 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 778536 CATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAGCCCAG 778477 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | ||| ||||||||| ||| | || |||||||| Sbjct 778476 TGACACAATTGAGAACGTGAAGGCTAAAATCCAGGACAAGGAGGGCATCCCTCCCGACCA 778417 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| | ||||| || | ||| || || Sbjct 778416 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACACTCTCCGACTACAA 778357 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || ||||| || || || || | |||||||| || Sbjct 778356 CATCCAGAAGGAGTCCACTCTGCACCTTGTCCTGCGCCTGAGGGGTGG 778309 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 778764 CATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTAGAGCCCAG 778705 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | ||| |||||| || ||| | || |||||||| Sbjct 778704 TGACACAATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAGGGCATCCCCCCCGACCA 778645 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| | ||||| || | ||| || || Sbjct 778644 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACACTCTCCGACTACAA 778585 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| || || || ||||| || || || || | |||||||| || Sbjct 778584 CATTCAGAAGGAGTCCACTCTGCACCTTGTCCTGCGCCTGAGGGGTGG 778537 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/233 (69%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| ||||| || ||||| ||||| ||||| || |||||| | || || || Sbjct 779224 TCAAA-ATGCAGATTTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTAGAG 779166 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| | || | || || | ||| ||||||||||||| | || || Sbjct 779165 CCCAGTGACACAATTGAGAACGTGAAGGCCAAAATCCAGGACAAGGAAGGCATCCCTCCT 779106 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || || || ||||| ||| | ||||| | || | || Sbjct 779105 GACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGTCGCACACTCTCTGAC 779046 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || || || || ||||| || || || || | |||||||| || Sbjct 779045 TACAACATCCAGAAGGAGTCCACTCTGCACCTTGTCCTACGCCTGAGGGGTGG 778993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444651125899680