Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq152438 114 2e-20 seq1 111 2e-19 seq152282 98.7 1e-15 seq152131 84.2 3e-11 >seq152438 Length=1158950 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 ||||||||| || || | ||| ||||| || || | ||| ||||| || || | ||| | Sbjct 125156 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAAGTTAATCCAGGCATAAGACCCCTCTTCT 125097 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||||| ||| || |||||||| |||||||||||||| || || ||||||| Sbjct 125096 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 125037 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | ||| || || Sbjct 125036 CAACCACTCTTTCCCC 125021 Score = 107 bits (118), Expect = 2e-18 Identities = 106/136 (78%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 ||||||||| || || | ||| ||||| || | | ||| ||||| || || | ||| | Sbjct 128084 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAATTAA-TCCAGGCATAAGACCCCTCTTCT 128026 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||||| ||| || |||||||| |||||||||||||| || || ||||||| Sbjct 128025 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 127966 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | ||| || || Sbjct 127965 CAACCACTCTTTCCCC 127950 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || ||||| ||||||| || ||||||| ||| | ||||||||| |||||||| ||| | Sbjct 103312 ACCTCTTCGGCTGTCCAGAAAGATGCCTGTGCTTGTTTATACATTTTCCAGATTTCAGGG 103253 Query 34140 TATTGGATTGGGAAAATAACAAATC 34164 || |||||||||||||| ||||||| Sbjct 103252 TACTGGATTGGGAAAATGACAAATC 103228 >seq1 Length=47594283 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 ||||||||||||| || | ||| || ||||| ||||| || ||||||| || | || | Sbjct 29601950 CCTCGTCTCTACTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATTAACCCTCTTTTCT 29602009 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| |||||||| || || || || |||||||||||||| ||||| || ||||||| Sbjct 29602010 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCCTCTACCGCTGCAAAGG 29602069 Query 33724 C 33724 | Sbjct 29602070 C 29602070 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/143 (76%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 33231 TTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTC--TTCTTGA-GACATAACTCCC 33287 || || || ||||| |||| |||| |||| ||| || || || ||||| |||||| Sbjct 29600007 TTCCTCTAGAAGTCTGCATCCAAAGTAAAAGAATTCTCAGTTGAAGATGACATTACTCCC 29600066 Query 33288 ATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATA 33347 ||| | || ||||| || || | || || |||||||| ||||| ||||||||||| || Sbjct 29600067 ATTCTCTGATATTCTCCTACTCTCTTCTCAAAAAAATTTGTTTTCCCTTCCAATGAGATG 29600126 Query 33348 TTTTCCATGAAATCAAACGGATT 33370 |||||||| || ||||| || || Sbjct 29600127 TTTTCCATAAAGTCAAATGGGTT 29600149 >seq152282 Length=256244 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || ||||||||||||| ||||| |||||||| || || ||||| || ||||| | Sbjct 176477 ACCTGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATG 176536 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62499 ||||| ||||| ||||| || || ||||| || ||||| ||||| || |||| Sbjct 176537 GACTCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCA 176588 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || ||||||||||||| ||||| |||||||| || || ||||| || ||||| | Sbjct 178409 ACCTGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATG 178468 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62499 ||||| ||||| ||||| || || ||||| || ||||| ||||| || |||| Sbjct 178469 GACTCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCA 178520 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || ||| |||||||| |||||||| |||||||| || || | ||| || || || | || Sbjct 185784 CTCCACACGTTTCATGAAGAGATCTGGAATCCAGAGGGCGAAAAAAAGGTCCCTGGCTCG 185843 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 ||||| || || || || ||||| || | ||| || || | | || || |||||| Sbjct 185844 CTGTTCTTCCTTGCCAGTGTTCTTCTTCAAATCCAGAAATTCAAAGATGTCCAGATGCCA 185903 Query 63383 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63415 |||||| | ||| ||||| | |||||||||| Sbjct 185904 CGGTTCGAGGTAAATGGCAAATGCTCCAGGCCG 185936 >seq152131 Length=3244540 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 || ||||||||||| | | | | || ||||||| |||||| ||||| | ||||| ||| Sbjct 642028 GTAACTTTCTATGAGGTACATGTTGTCTTACAAGCGTTCATGCTGACTGCAGCAGTATTT 641969 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| ||||| | | |||||||| ||||| ||||| ||||| ||| | | | |||| Sbjct 641968 CTTGGATTGACTGCTTACACTCTACAGTCAAAAAGAGACTTCAGCAAATTCGGAGCAGG 641910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628241843601120