Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06-
17] 200,154 sequences; 1,995,607,322 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq152438 114 2e-20
seq1 111 2e-19
seq152282 98.7 1e-15
seq152131 84.2 3e-11
>seq152438
Length=1158950
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
||||||||| || || | ||| ||||| || || | ||| ||||| || || | ||| |
Sbjct 125156 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAAGTTAATCCAGGCATAAGACCCCTCTTCT 125097
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||||||||||| ||| || |||||||| |||||||||||||| || || |||||||
Sbjct 125096 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 125037
Query 33724 CAATAAGTCTCTCTCC 33739
||| | ||| || ||
Sbjct 125036 CAACCACTCTTTCCCC 125021
Score = 107 bits (118), Expect = 2e-18
Identities = 106/136 (78%), Gaps = 1/136 (1%)
Strand=Plus/Minus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
||||||||| || || | ||| ||||| || | | ||| ||||| || || | ||| |
Sbjct 128084 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAATTAA-TCCAGGCATAAGACCCCTCTTCT 128026
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||||||||||| ||| || |||||||| |||||||||||||| || || |||||||
Sbjct 128025 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 127966
Query 33724 CAATAAGTCTCTCTCC 33739
||| | ||| || ||
Sbjct 127965 CAACCACTCTTTCCCC 127950
Score = 91.5 bits (100), Expect = 2e-13
Identities = 71/85 (84%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139
|| ||||| ||||||| || ||||||| ||| | ||||||||| |||||||| ||| |
Sbjct 103312 ACCTCTTCGGCTGTCCAGAAAGATGCCTGTGCTTGTTTATACATTTTCCAGATTTCAGGG 103253
Query 34140 TATTGGATTGGGAAAATAACAAATC 34164
|| |||||||||||||| |||||||
Sbjct 103252 TACTGGATTGGGAAAATGACAAATC 103228
>seq1
Length=47594283
Score = 111 bits (122), Expect = 2e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
||||||||||||| || | ||| || ||||| ||||| || ||||||| || | || |
Sbjct 29601950 CCTCGTCTCTACTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATTAACCCTCTTTTCT 29602009
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||| |||||||| || || || || |||||||||||||| ||||| || |||||||
Sbjct 29602010 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCCTCTACCGCTGCAAAGG 29602069
Query 33724 C 33724
|
Sbjct 29602070 C 29602070
Score = 95.1 bits (104), Expect = 2e-14
Identities = 108/143 (76%), Gaps = 3/143 (2%)
Strand=Plus/Plus
Query 33231 TTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTC--TTCTTGA-GACATAACTCCC 33287
|| || || ||||| |||| |||| |||| ||| || || || ||||| ||||||
Sbjct 29600007 TTCCTCTAGAAGTCTGCATCCAAAGTAAAAGAATTCTCAGTTGAAGATGACATTACTCCC 29600066
Query 33288 ATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATA 33347
||| | || ||||| || || | || || |||||||| ||||| ||||||||||| ||
Sbjct 29600067 ATTCTCTGATATTCTCCTACTCTCTTCTCAAAAAAATTTGTTTTCCCTTCCAATGAGATG 29600126
Query 33348 TTTTCCATGAAATCAAACGGATT 33370
|||||||| || ||||| || ||
Sbjct 29600127 TTTTCCATAAAGTCAAATGGGTT 29600149
>seq152282
Length=256244
Score = 98.7 bits (108), Expect = 1e-15
Identities = 89/112 (79%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447
|| || ||||||||||||| ||||| |||||||| || || ||||| || ||||| |
Sbjct 176477 ACCTGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATG 176536
Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62499
||||| ||||| ||||| || || ||||| || ||||| ||||| || ||||
Sbjct 176537 GACTCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCA 176588
Score = 98.7 bits (108), Expect = 1e-15
Identities = 89/112 (79%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447
|| || ||||||||||||| ||||| |||||||| || || ||||| || ||||| |
Sbjct 178409 ACCTGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATG 178468
Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62499
||||| ||||| ||||| || || ||||| || ||||| ||||| || ||||
Sbjct 178469 GACTCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCA 178520
Score = 91.5 bits (100), Expect = 2e-13
Identities = 112/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322
|| ||| |||||||| |||||||| |||||||| || || | ||| || || || | ||
Sbjct 185784 CTCCACACGTTTCATGAAGAGATCTGGAATCCAGAGGGCGAAAAAAAGGTCCCTGGCTCG 185843
Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382
||||| || || || || ||||| || | ||| || || | | || || ||||||
Sbjct 185844 CTGTTCTTCCTTGCCAGTGTTCTTCTTCAAATCCAGAAATTCAAAGATGTCCAGATGCCA 185903
Query 63383 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63415
|||||| | ||| ||||| | ||||||||||
Sbjct 185904 CGGTTCGAGGTAAATGGCAAATGCTCCAGGCCG 185936
>seq152131
Length=3244540
Score = 84.2 bits (92), Expect = 3e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548
|| ||||||||||| | | | | || ||||||| |||||| ||||| | ||||| |||
Sbjct 642028 GTAACTTTCTATGAGGTACATGTTGTCTTACAAGCGTTCATGCTGACTGCAGCAGTATTT 641969
Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607
|||| ||||| | | |||||||| ||||| ||||| ||||| ||| | | | ||||
Sbjct 641968 CTTGGATTGACTGCTTACACTCTACAGTCAAAAAGAGACTTCAGCAAATTCGGAGCAGG 641910
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628241843601120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |