Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06-
17] 200,154 sequences; 1,995,607,322 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq152438 120 3e-22
seq1 118 1e-21
>seq152438
Length=1158950
Score = 120 bits (132), Expect = 3e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
||||||| ||||| ||||||||||| || |||||||| ||||| | || | || ||
Sbjct 125154 TCGTCTCGGCTTATGAGTTCATTAGAGAAAGTTAATCCAGGCATAAGACCCCTCTTCTTC 125095
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||||||||| |||||||| || || || ||||| ||||| |||||||| ||||| ||
Sbjct 125094 AGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGGCA 125035
Query 11774 ACTACTCTTTCTCC 11787
|| |||||||| ||
Sbjct 125034 ACCACTCTTTCCCC 125021
Score = 113 bits (124), Expect = 4e-20
Identities = 106/134 (79%), Gaps = 1/134 (1%)
Strand=Plus/Minus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
||||||| ||||| ||||||||||| || ||||||| ||||| | || | || ||
Sbjct 128082 TCGTCTCGGCTTATGAGTTCATTAGAGAA-ATTAATCCAGGCATAAGACCCCTCTTCTTC 128024
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||||||||| |||||||| || || || ||||| ||||| |||||||| ||||| ||
Sbjct 128023 AGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGGCA 127964
Query 11774 ACTACTCTTTCTCC 11787
|| |||||||| ||
Sbjct 127963 ACCACTCTTTCCCC 127950
>seq1
Length=47594283
Score = 118 bits (130), Expect = 1e-21
Identities = 101/125 (81%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
||||||||||| || |||||||| ||||| || | || ||||| || |||| ||| ||
Sbjct 29601952 TCGTCTCTACTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATTAACCCTCTTTTCTTG 29602011
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| ||||| | ||||| |||||||||||||| |||||||| || |||||||| |||
Sbjct 29602012 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCCTCTACCGCTGCAAAGGCT 29602071
Query 11774 ACTAC 11778
|| ||
Sbjct 29602072 ACAAC 29602076
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 467352586089760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |