Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq152131 143 3e-29 seq1 120 4e-22 seq152438 105 9e-18 seq152282 104 3e-17 >seq152131 Length=3244540 Score = 143 bits (158), Expect = 3e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 9229 ATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCA 9288 |||| ||||| | |||| | | | | | ||| || | |||||||||||||||||||| Sbjct 638395 ATTTTTTATTCACTGCTTCTAGTACCCGCAGCAGGTGGAGGAACAGATTGATGATATCCA 638454 Query 9289 AGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGT 9348 |||| | ||||| || || | | ||| ||||| || ||||| ||||| || ||||||| Sbjct 638455 AGTAAAGGTTGATTGAAGCCAGTATATACTCTTCGGGAGAGAGTTTATGCATCAGTGAGT 638514 Query 9349 GCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCT 9408 | ||||| ||||| |||||||| ||||| | || ||||| | |||| | || ||||| Sbjct 638515 GAGTGTCGTAGATGATGAATCCACAGAAAAGGAGAGCCCCTAGTGCAGCAAAGATCAGCT 638574 Query 9409 CCACTGTTTCACTTTGCACAAATA 9432 ||||||| ||||| | | ||||| Sbjct 638575 CCACTGTCTCACTATAGAAAAATA 638598 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||| | ||| ||||| ||||| ||||| |||||||| || ||||||| ||||| Sbjct 641910 CCTGCTCCGAATTTGCTGAAGTCTCTTTTTGACTGTAGAGTGTAAGCAGTCAATCCAAGA 641969 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || ||||| | |||||||||||| ||||| | || ||||| || ||||||||||| || Sbjct 641970 AATACTGCTGCAGTCAGCATGAACGCTTGTAAGACAACATGTACCTCATAGAAAGTTAC 642028 >seq1 Length=47594283 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 ||||||||||||| || | ||| |||||||| ||||| || ||||||| || | || | Sbjct 29601950 CCTCGTCTCTACTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATTAACCCTCTTTTCT 29602009 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| |||||||| ||||| || ||||||||||| ||||| ||||| || ||||||| Sbjct 29602010 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCCTCTACCGCTGCAAAGG 29602069 Query 36300 C 36300 | Sbjct 29602070 C 29602070 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478 ||||||| || || ||||| | |||||| ||||| |||||||| || ||||| || || Sbjct 29604512 TCTTTAATGTACGTGTCAATAAGAAGACTGTACATCTCCGAATGGATATTTTCCATAGCA 29604571 Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 ||||| || || |||||||| | ||||| || |||||||||||| Sbjct 29604572 ATTTGGAAACCATAGAAACACCGCGCCTCTGTTATCTGTACTTCT 29604616 >seq152438 Length=1158950 Score = 105 bits (116), Expect = 9e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 ||||||||| || || | ||| || || || || | ||| ||||| || || | ||| | Sbjct 125156 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAAGTTAATCCAGGCATAAGACCCCTCTTCT 125097 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||||| ||||| ||||| || ||||| |||||||| || |||||||||| Sbjct 125096 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 125037 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | ||| || || Sbjct 125036 CAACCACTCTTTCCCC 125021 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/136 (76%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 ||||||||| || || | ||| || || || | | ||| ||||| || || | ||| | Sbjct 128084 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAATTAA-TCCAGGCATAAGACCCCTCTTCT 128026 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||||| ||||| ||||| || ||||| |||||||| || |||||||||| Sbjct 128025 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 127966 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | ||| || || Sbjct 127965 CAACCACTCTTTCCCC 127950 >seq152282 Length=256244 Score = 104 bits (114), Expect = 3e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || |||||||||||||||| ||||| |||||||| || || ||||| || ||||| | Sbjct 176477 ACCTGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATG 176536 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 65292 ||||| ||||| ||||| || || ||||| || ||||| ||||| || |||| Sbjct 176537 GACTCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCA 176588 Score = 104 bits (114), Expect = 3e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || |||||||||||||||| ||||| |||||||| || || ||||| || ||||| | Sbjct 178409 ACCTGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATG 178468 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 65292 ||||| ||||| ||||| || || ||||| || ||||| ||||| || |||| Sbjct 178469 GACTCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCA 178520 Score = 95.1 bits (104), Expect = 2e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 66788 CTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCT 66847 ||||| | | |||| || | ||| || ||||||||||| | ||| || || || || || Sbjct 197428 CTCCAACTCACCACTGAACACTTTCTTCGTTTCTTTGTGCAAATTAGAGACAGCAATCCT 197487 Query 66848 AGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGC 66907 || |||| |||||||| || |||| || ||||| || || ||| |||| || || Sbjct 197488 CGCTGCTAGGATGGCATAGTCTGGATATTTAGTAGTCAGGGTCGCAGCTGTTTCAGCAGC 197547 Query 66908 CAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || | ||| ||||| || || || | |||| || ||||| || ||||| Sbjct 197548 CAGTGTATCTAGTTCCACCGTGGTGACCCCGCTGTATAAACCCTGGATTACTTTCAT 197604 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || ||| |||||||| |||||||| |||||||| || || | ||| | || |||| || Sbjct 185784 CTCCACACGTTTCATGAAGAGATCTGGAATCCAGAGGGCGAAAAAAAGGTCCCTGGCTCG 185843 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 ||||| || || || || ||||| || | ||| || || | | || || |||||| Sbjct 185844 CTGTTCTTCCTTGCCAGTGTTCTTCTTCAAATCCAGAAATTCAAAGATGTCCAGATGCCA 185903 Query 66176 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 66208 |||||| | ||| ||||| | |||||||||| Sbjct 185904 CGGTTCGAGGTAAATGGCAAATGCTCCAGGCCG 185936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656526101017360