Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06-
17] 200,154 sequences; 1,995,607,322 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq152131 143 3e-29
seq1 120 4e-22
seq152438 105 9e-18
seq152282 104 3e-17
>seq152131
Length=3244540
Score = 143 bits (158), Expect = 3e-29
Identities = 154/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 9229 ATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCA 9288
|||| ||||| | |||| | | | | | ||| || | ||||||||||||||||||||
Sbjct 638395 ATTTTTTATTCACTGCTTCTAGTACCCGCAGCAGGTGGAGGAACAGATTGATGATATCCA 638454
Query 9289 AGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGT 9348
|||| | ||||| || || | | ||| ||||| || ||||| ||||| || |||||||
Sbjct 638455 AGTAAAGGTTGATTGAAGCCAGTATATACTCTTCGGGAGAGAGTTTATGCATCAGTGAGT 638514
Query 9349 GCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCT 9408
| ||||| ||||| |||||||| ||||| | || ||||| | |||| | || |||||
Sbjct 638515 GAGTGTCGTAGATGATGAATCCACAGAAAAGGAGAGCCCCTAGTGCAGCAAAGATCAGCT 638574
Query 9409 CCACTGTTTCACTTTGCACAAATA 9432
||||||| ||||| | | |||||
Sbjct 638575 CCACTGTCTCACTATAGAAAAATA 638598
Score = 116 bits (128), Expect = 5e-21
Identities = 97/119 (82%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539
|||||||| | ||| ||||| ||||| ||||| |||||||| || ||||||| |||||
Sbjct 641910 CCTGCTCCGAATTTGCTGAAGTCTCTTTTTGACTGTAGAGTGTAAGCAGTCAATCCAAGA 641969
Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598
|| ||||| | |||||||||||| ||||| | || ||||| || ||||||||||| ||
Sbjct 641970 AATACTGCTGCAGTCAGCATGAACGCTTGTAAGACAACATGTACCTCATAGAAAGTTAC 642028
>seq1
Length=47594283
Score = 120 bits (132), Expect = 4e-22
Identities = 99/121 (82%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
||||||||||||| || | ||| |||||||| ||||| || ||||||| || | || |
Sbjct 29601950 CCTCGTCTCTACTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATTAACCCTCTTTTCT 29602009
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||| |||||||| ||||| || ||||||||||| ||||| ||||| || |||||||
Sbjct 29602010 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCCTCTACCGCTGCAAAGG 29602069
Query 36300 C 36300
|
Sbjct 29602070 C 29602070
Score = 95.1 bits (104), Expect = 2e-14
Identities = 84/105 (80%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478
||||||| || || ||||| | |||||| ||||| |||||||| || ||||| || ||
Sbjct 29604512 TCTTTAATGTACGTGTCAATAAGAAGACTGTACATCTCCGAATGGATATTTTCCATAGCA 29604571
Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523
||||| || || |||||||| | ||||| || ||||||||||||
Sbjct 29604572 ATTTGGAAACCATAGAAACACCGCGCCTCTGTTATCTGTACTTCT 29604616
>seq152438
Length=1158950
Score = 105 bits (116), Expect = 9e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
||||||||| || || | ||| || || || || | ||| ||||| || || | ||| |
Sbjct 125156 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAAGTTAATCCAGGCATAAGACCCCTCTTCT 125097
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||||||||||| ||||| ||||| || ||||| |||||||| || ||||||||||
Sbjct 125096 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 125037
Query 36300 CAATAAGTCTCTCTCC 36315
||| | ||| || ||
Sbjct 125036 CAACCACTCTTTCCCC 125021
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/136 (76%), Gaps = 1/136 (1%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
||||||||| || || | ||| || || || | | ||| ||||| || || | ||| |
Sbjct 128084 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAATTAA-TCCAGGCATAAGACCCCTCTTCT 128026
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||||||||||| ||||| ||||| || ||||| |||||||| || ||||||||||
Sbjct 128025 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 127966
Query 36300 CAATAAGTCTCTCTCC 36315
||| | ||| || ||
Sbjct 127965 CAACCACTCTTTCCCC 127950
>seq152282
Length=256244
Score = 104 bits (114), Expect = 3e-17
Identities = 90/112 (80%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240
|| |||||||||||||||| ||||| |||||||| || || ||||| || ||||| |
Sbjct 176477 ACCTGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATG 176536
Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 65292
||||| ||||| ||||| || || ||||| || ||||| ||||| || ||||
Sbjct 176537 GACTCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCA 176588
Score = 104 bits (114), Expect = 3e-17
Identities = 90/112 (80%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240
|| |||||||||||||||| ||||| |||||||| || || ||||| || ||||| |
Sbjct 178409 ACCTGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATG 178468
Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 65292
||||| ||||| ||||| || || ||||| || ||||| ||||| || ||||
Sbjct 178469 GACTCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCA 178520
Score = 95.1 bits (104), Expect = 2e-14
Identities = 127/177 (72%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 66788 CTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCT 66847
||||| | | |||| || | ||| || ||||||||||| | ||| || || || || ||
Sbjct 197428 CTCCAACTCACCACTGAACACTTTCTTCGTTTCTTTGTGCAAATTAGAGACAGCAATCCT 197487
Query 66848 AGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGC 66907
|| |||| |||||||| || |||| || ||||| || || ||| |||| || ||
Sbjct 197488 CGCTGCTAGGATGGCATAGTCTGGATATTTAGTAGTCAGGGTCGCAGCTGTTTCAGCAGC 197547
Query 66908 CAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964
||| || || | ||| ||||| || || || | |||| || ||||| || |||||
Sbjct 197548 CAGTGTATCTAGTTCCACCGTGGTGACCCCGCTGTATAAACCCTGGATTACTTTCAT 197604
Score = 91.5 bits (100), Expect = 2e-13
Identities = 112/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115
|| ||| |||||||| |||||||| |||||||| || || | ||| | || |||| ||
Sbjct 185784 CTCCACACGTTTCATGAAGAGATCTGGAATCCAGAGGGCGAAAAAAAGGTCCCTGGCTCG 185843
Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175
||||| || || || || ||||| || | ||| || || | | || || ||||||
Sbjct 185844 CTGTTCTTCCTTGCCAGTGTTCTTCTTCAAATCCAGAAATTCAAAGATGTCCAGATGCCA 185903
Query 66176 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 66208
|||||| | ||| ||||| | ||||||||||
Sbjct 185904 CGGTTCGAGGTAAATGGCAAATGCTCCAGGCCG 185936
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 656526101017360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |