Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06-
17] 200,154 sequences; 1,995,607,322 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq1 132 7e-26
seq152438 111 2e-19
seq152282 104 3e-17
>seq1
Length=47594283
Score = 132 bits (146), Expect = 7e-26
Identities = 105/126 (83%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
||||||||||||| || ||||| |||||||| ||||| || ||||||| || | || |
Sbjct 29601950 CCTCGTCTCTACTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATTAACCCTCTTTTCT 29602009
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||| |||||||| ||||| || ||||||||||||||||| ||||| || |||||||
Sbjct 29602010 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCCTCTACCGCTGCAAAGG 29602069
Query 50102 CAACAA 50107
| ||||
Sbjct 29602070 CTACAA 29602075
Score = 89.7 bits (98), Expect = 7e-13
Identities = 107/143 (75%), Gaps = 3/143 (2%)
Strand=Plus/Plus
Query 49609 TTTCTTTAAAAGTCAACATCTAGAGAAAAATGATTATC--TTCTTGA-GACATAACTCCC 49665
|| || || ||||| |||| | || |||| ||| || || || ||||| ||||||
Sbjct 29600007 TTCCTCTAGAAGTCTGCATCCAAAGTAAAAGAATTCTCAGTTGAAGATGACATTACTCCC 29600066
Query 49666 ATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATA 49725
||| | || ||||| || || | || || |||||||| ||||| ||||||||||| ||
Sbjct 29600067 ATTCTCTGATATTCTCCTACTCTCTTCTCAAAAAAATTTGTTTTCCCTTCCAATGAGATG 29600126
Query 49726 TTTTCCATGAAATCAAACGGATT 49748
|||||||| || ||||| || ||
Sbjct 29600127 TTTTCCATAAAGTCAAATGGGTT 29600149
>seq152438
Length=1158950
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
||||||||| || || ||||| || || || || | ||| ||||| || || | ||| |
Sbjct 125156 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAAGTTAATCCAGGCATAAGACCCCTCTTCT 125097
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||||||||||| ||||| || || || |||||||||||||| || || |||||||
Sbjct 125096 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 125037
Query 50102 CAACAAGTCTCTCTCC 50117
|||| | ||| || ||
Sbjct 125036 CAACCACTCTTTCCCC 125021
Score = 102 bits (112), Expect = 1e-16
Identities = 105/136 (77%), Gaps = 1/136 (1%)
Strand=Plus/Minus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
||||||||| || || ||||| || || || | | ||| ||||| || || | ||| |
Sbjct 128084 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAATTAA-TCCAGGCATAAGACCCCTCTTCT 128026
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||||||||||| ||||| || || || |||||||||||||| || || |||||||
Sbjct 128025 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 127966
Query 50102 CAACAAGTCTCTCTCC 50117
|||| | ||| || ||
Sbjct 127965 CAACCACTCTTTCCCC 127950
Score = 93.3 bits (102), Expect = 6e-14
Identities = 72/86 (84%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516
||| ||||| ||||||| || ||||||| ||| | ||||||||| |||||||| ||| |
Sbjct 103313 TACCTCTTCGGCTGTCCAGAAAGATGCCTGTGCTTGTTTATACATTTTCCAGATTTCAGG 103254
Query 50517 ATATTGGATTGGGAAAATAACAAATC 50542
|| |||||||||||||| |||||||
Sbjct 103253 GTACTGGATTGGGAAAATGACAAATC 103228
>seq152282
Length=256244
Score = 104 bits (114), Expect = 3e-17
Identities = 90/112 (80%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119
|| |||||||||||||||| ||||| |||||||| || || ||||| |||||||| |
Sbjct 176477 ACCTGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATG 176536
Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCA 79171
|| || ||||| ||||| || || ||||| || || |||||||| || ||||
Sbjct 176537 GACTCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCA 176588
Score = 104 bits (114), Expect = 3e-17
Identities = 90/112 (80%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119
|| |||||||||||||||| ||||| |||||||| || || ||||| |||||||| |
Sbjct 178409 ACCTGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATG 178468
Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCA 79171
|| || ||||| ||||| || || ||||| || || |||||||| || ||||
Sbjct 178469 GACTCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCA 178520
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716471745332560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |