Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 132 7e-26 seq152438 111 2e-19 seq152282 104 3e-17 >seq1 Length=47594283 Score = 132 bits (146), Expect = 7e-26 Identities = 105/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 ||||||||||||| || ||||| |||||||| ||||| || ||||||| || | || | Sbjct 29601950 CCTCGTCTCTACTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATTAACCCTCTTTTCT 29602009 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| |||||||| ||||| || ||||||||||||||||| ||||| || ||||||| Sbjct 29602010 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCCTCTACCGCTGCAAAGG 29602069 Query 50102 CAACAA 50107 | |||| Sbjct 29602070 CTACAA 29602075 Score = 89.7 bits (98), Expect = 7e-13 Identities = 107/143 (75%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 49609 TTTCTTTAAAAGTCAACATCTAGAGAAAAATGATTATC--TTCTTGA-GACATAACTCCC 49665 || || || ||||| |||| | || |||| ||| || || || ||||| |||||| Sbjct 29600007 TTCCTCTAGAAGTCTGCATCCAAAGTAAAAGAATTCTCAGTTGAAGATGACATTACTCCC 29600066 Query 49666 ATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATA 49725 ||| | || ||||| || || | || || |||||||| ||||| ||||||||||| || Sbjct 29600067 ATTCTCTGATATTCTCCTACTCTCTTCTCAAAAAAATTTGTTTTCCCTTCCAATGAGATG 29600126 Query 49726 TTTTCCATGAAATCAAACGGATT 49748 |||||||| || ||||| || || Sbjct 29600127 TTTTCCATAAAGTCAAATGGGTT 29600149 >seq152438 Length=1158950 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 ||||||||| || || ||||| || || || || | ||| ||||| || || | ||| | Sbjct 125156 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAAGTTAATCCAGGCATAAGACCCCTCTTCT 125097 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||||| ||||| || || || |||||||||||||| || || ||||||| Sbjct 125096 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 125037 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | ||| || || Sbjct 125036 CAACCACTCTTTCCCC 125021 Score = 102 bits (112), Expect = 1e-16 Identities = 105/136 (77%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 ||||||||| || || ||||| || || || | | ||| ||||| || || | ||| | Sbjct 128084 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAATTAA-TCCAGGCATAAGACCCCTCTTCT 128026 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||||| ||||| || || || |||||||||||||| || || ||||||| Sbjct 128025 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 127966 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | ||| || || Sbjct 127965 CAACCACTCTTTCCCC 127950 Score = 93.3 bits (102), Expect = 6e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| ||||| ||||||| || ||||||| ||| | ||||||||| |||||||| ||| | Sbjct 103313 TACCTCTTCGGCTGTCCAGAAAGATGCCTGTGCTTGTTTATACATTTTCCAGATTTCAGG 103254 Query 50517 ATATTGGATTGGGAAAATAACAAATC 50542 || |||||||||||||| ||||||| Sbjct 103253 GTACTGGATTGGGAAAATGACAAATC 103228 >seq152282 Length=256244 Score = 104 bits (114), Expect = 3e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || |||||||||||||||| ||||| |||||||| || || ||||| |||||||| | Sbjct 176477 ACCTGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATG 176536 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCA 79171 || || ||||| ||||| || || ||||| || || |||||||| || |||| Sbjct 176537 GACTCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCA 176588 Score = 104 bits (114), Expect = 3e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || |||||||||||||||| ||||| |||||||| || || ||||| |||||||| | Sbjct 178409 ACCTGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATG 178468 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCA 79171 || || ||||| ||||| || || ||||| || || |||||||| || |||| Sbjct 178469 GACTCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCA 178520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716471745332560