Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1 114 2e-20 seq152282 105 9e-18 seq152438 102 1e-16 >seq1 Length=47594283 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| |||||||| || | ||| |||||||| ||||| || ||||||| || | || | Sbjct 29601950 CCTCGTCTCTACTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATTAACCCTCTTTTCT 29602009 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || ||||||||||||||||| ||||| || ||||||| Sbjct 29602010 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCCTCTACCGCTGCAAAGG 29602069 Query 42207 C 42207 | Sbjct 29602070 C 29602070 Score = 89.7 bits (98), Expect = 7e-13 Identities = 107/143 (75%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 41714 TTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTC--TTCTTGA-GACATAACTCCC 41770 || || || ||||| |||| |||| |||| ||| || || || ||||| |||||| Sbjct 29600007 TTCCTCTAGAAGTCTGCATCCAAAGTAAAAGAATTCTCAGTTGAAGATGACATTACTCCC 29600066 Query 41771 ATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATA 41830 ||| | || ||||| || || | || || |||||||| || || ||||||||||| || Sbjct 29600067 ATTCTCTGATATTCTCCTACTCTCTTCTCAAAAAAATTTGTTTTCCCTTCCAATGAGATG 29600126 Query 41831 TTTTCCATGAAATCAAACGGATT 41853 |||||||| || ||||| || || Sbjct 29600127 TTTTCCATAAAGTCAAATGGGTT 29600149 >seq152282 Length=256244 Score = 105 bits (116), Expect = 9e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || |||||||||||||||| ||||| |||||||| || || ||||| || ||||| | Sbjct 176477 ACCTGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATG 176536 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||| ||||| ||||| || || ||||| || ||||| ||||| || |||| | || Sbjct 176537 GACTCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCAGGAGCAGG 176596 Query 71263 CTATTTCTAAGACCAT 71278 || || || | ||||| Sbjct 176597 CTGTTCCTGACACCAT 176612 Score = 105 bits (116), Expect = 9e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || |||||||||||||||| ||||| |||||||| || || ||||| || ||||| | Sbjct 178409 ACCTGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATG 178468 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||| ||||| ||||| || || ||||| || ||||| ||||| || |||| | || Sbjct 178469 GACTCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCAGGAGCAGG 178528 Query 71263 CTATTTCTAAGACCAT 71278 || || || | ||||| Sbjct 178529 CTGTTCCTGACACCAT 178544 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 72410 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 72469 |||| | || || ||||| || | ||||| || || || || ||||| | ||||||| Sbjct 192262 GACGGTTGGTGCCAGCATTGAAGAGTGTAGGGGAGGCATGGGTGAACCACCTCTCAGACA 192321 Query 72470 GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACAC 72529 | || ||||| |||||||| || | || |||||| || || || || || || || | Sbjct 192322 GAAGGTTGTAAGTCTCAATCGCAGCATCGATATCCTCTTCGTGAATCCCCACAGCCACTC 192381 Query 72530 GCATTAACATATGCTGAGGTC 72550 ||||| |||||||||||||| Sbjct 192382 TCATTAGCATATGCTGAGGTC 192402 Score = 86.0 bits (94), Expect = 8e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 || ||| ||| || || ||||| || | | | ||| || ||||| || || || | Sbjct 180584 GAGCCTTGATAGGTTTCATATGGGCCATGGTCCTTGGCAAGGTCACAGCTGGCATCCAGG 180643 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 |||||||||||||| |||||||| || | || ||| || || || || ||||| ||| Sbjct 180644 GCTCCATAATAAATCGTTTCGAAGATTTGCTGATTCAGTAACTGGGCCTCGGGGCTCTCA 180703 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 || ||||| | | || ||||| || || || | ||||| ||||| || || || || Sbjct 180704 AAGGGATACCTCATCAGGATAAAAGCATCCGCCAGGCCTTGCACGCCGATTCCAATGGGG 180763 Query 71554 CTGTGTCTCTTATTAGA 71570 | || | ||| || || Sbjct 180764 CGATGGCGCTTGTTGGA 180780 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 || |||||||| |||||||| |||||||| || || | ||| || || |||| || || Sbjct 185788 ACACGTTTCATGAAGAGATCTGGAATCCAGAGGGCGAAAAAAAGGTCCCTGGCTCGCTGT 185847 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || || || || ||||| || | ||| || || | | || || |||||||||| Sbjct 185848 TCTTCCTTGCCAGTGTTCTTCTTCAAATCCAGAAATTCAAAGATGTCCAGATGCCACGGT 185907 Query 72142 TCCAAGTATATGGCCATAACTCCCGGCCG 72170 || | ||| ||||| | |||| ||||| Sbjct 185908 TCGAGGTAAATGGCAAATGCTCCAGGCCG 185936 >seq152438 Length=1158950 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| |||| || || | ||| || || || || | ||| ||||| || || | ||| | Sbjct 125156 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAAGTTAATCCAGGCATAAGACCCCTCTTCT 125097 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||| | ||||| ||||| || |||||||||||||| || |||||||||| Sbjct 125096 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 125037 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | ||| || || Sbjct 125036 CAACCACTCTTTCCCC 125021 Score = 93.3 bits (102), Expect = 6e-14 Identities = 103/136 (76%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| |||| || || | ||| || || || | | ||| ||||| || || | ||| | Sbjct 128084 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAATTAA-TCCAGGCATAAGACCCCTCTTCT 128026 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||| | ||||| ||||| || |||||||||||||| || |||||||||| Sbjct 128025 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 127966 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | ||| || || Sbjct 127965 CAACCACTCTTTCCCC 127950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669460060057040