Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06-
17] 200,154 sequences; 1,995,607,322 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1 114 2e-20
seq152282 105 9e-18
seq152438 102 1e-16
>seq1
Length=47594283
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||| |||||||| || | ||| |||||||| ||||| || ||||||| || | || |
Sbjct 29601950 CCTCGTCTCTACTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATTAACCCTCTTTTCT 29602009
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| ||||| || ||||| || ||||||||||||||||| ||||| || |||||||
Sbjct 29602010 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCCTCTACCGCTGCAAAGG 29602069
Query 42207 C 42207
|
Sbjct 29602070 C 29602070
Score = 89.7 bits (98), Expect = 7e-13
Identities = 107/143 (75%), Gaps = 3/143 (2%)
Strand=Plus/Plus
Query 41714 TTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTC--TTCTTGA-GACATAACTCCC 41770
|| || || ||||| |||| |||| |||| ||| || || || ||||| ||||||
Sbjct 29600007 TTCCTCTAGAAGTCTGCATCCAAAGTAAAAGAATTCTCAGTTGAAGATGACATTACTCCC 29600066
Query 41771 ATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATA 41830
||| | || ||||| || || | || || |||||||| || || ||||||||||| ||
Sbjct 29600067 ATTCTCTGATATTCTCCTACTCTCTTCTCAAAAAAATTTGTTTTCCCTTCCAATGAGATG 29600126
Query 41831 TTTTCCATGAAATCAAACGGATT 41853
|||||||| || ||||| || ||
Sbjct 29600127 TTTTCCATAAAGTCAAATGGGTT 29600149
>seq152282
Length=256244
Score = 105 bits (116), Expect = 9e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202
|| |||||||||||||||| ||||| |||||||| || || ||||| || ||||| |
Sbjct 176477 ACCTGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATG 176536
Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262
||||| ||||| ||||| || || ||||| || ||||| ||||| || |||| | ||
Sbjct 176537 GACTCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCAGGAGCAGG 176596
Query 71263 CTATTTCTAAGACCAT 71278
|| || || | |||||
Sbjct 176597 CTGTTCCTGACACCAT 176612
Score = 105 bits (116), Expect = 9e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202
|| |||||||||||||||| ||||| |||||||| || || ||||| || ||||| |
Sbjct 178409 ACCTGAAATTCTCCAGACAGGACTCTGCGAGTGTAGATGTTGCTGGTGTATGGTTCGATG 178468
Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262
||||| ||||| ||||| || || ||||| || ||||| ||||| || |||| | ||
Sbjct 178469 GACTCGTTATTCCCCAAGATCTGGGCAGTGGAGGCAGTTGGCATGGGGGCCAGGAGCAGG 178528
Query 71263 CTATTTCTAAGACCAT 71278
|| || || | |||||
Sbjct 178529 CTGTTCCTGACACCAT 178544
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 72410 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 72469
|||| | || || ||||| || | ||||| || || || || ||||| | |||||||
Sbjct 192262 GACGGTTGGTGCCAGCATTGAAGAGTGTAGGGGAGGCATGGGTGAACCACCTCTCAGACA 192321
Query 72470 GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACAC 72529
| || ||||| |||||||| || | || |||||| || || || || || || || |
Sbjct 192322 GAAGGTTGTAAGTCTCAATCGCAGCATCGATATCCTCTTCGTGAATCCCCACAGCCACTC 192381
Query 72530 GCATTAACATATGCTGAGGTC 72550
||||| ||||||||||||||
Sbjct 192382 TCATTAGCATATGCTGAGGTC 192402
Score = 86.0 bits (94), Expect = 8e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433
|| ||| ||| || || ||||| || | | | ||| || ||||| || || || |
Sbjct 180584 GAGCCTTGATAGGTTTCATATGGGCCATGGTCCTTGGCAAGGTCACAGCTGGCATCCAGG 180643
Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493
|||||||||||||| |||||||| || | || ||| || || || || ||||| |||
Sbjct 180644 GCTCCATAATAAATCGTTTCGAAGATTTGCTGATTCAGTAACTGGGCCTCGGGGCTCTCA 180703
Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553
|| ||||| | | || ||||| || || || | ||||| ||||| || || || ||
Sbjct 180704 AAGGGATACCTCATCAGGATAAAAGCATCCGCCAGGCCTTGCACGCCGATTCCAATGGGG 180763
Query 71554 CTGTGTCTCTTATTAGA 71570
| || | ||| || ||
Sbjct 180764 CGATGGCGCTTGTTGGA 180780
Score = 84.2 bits (92), Expect = 3e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
|| |||||||| |||||||| |||||||| || || | ||| || || |||| || ||
Sbjct 185788 ACACGTTTCATGAAGAGATCTGGAATCCAGAGGGCGAAAAAAAGGTCCCTGGCTCGCTGT 185847
Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141
|| || || || || ||||| || | ||| || || | | || || ||||||||||
Sbjct 185848 TCTTCCTTGCCAGTGTTCTTCTTCAAATCCAGAAATTCAAAGATGTCCAGATGCCACGGT 185907
Query 72142 TCCAAGTATATGGCCATAACTCCCGGCCG 72170
|| | ||| ||||| | |||| |||||
Sbjct 185908 TCGAGGTAAATGGCAAATGCTCCAGGCCG 185936
>seq152438
Length=1158950
Score = 102 bits (112), Expect = 1e-16
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||| |||| || || | ||| || || || || | ||| ||||| || || | ||| |
Sbjct 125156 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAAGTTAATCCAGGCATAAGACCCCTCTTCT 125097
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||||||||| | ||||| ||||| || |||||||||||||| || ||||||||||
Sbjct 125096 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 125037
Query 42207 CAATAAGTCTCTCTCC 42222
||| | ||| || ||
Sbjct 125036 CAACCACTCTTTCCCC 125021
Score = 93.3 bits (102), Expect = 6e-14
Identities = 103/136 (76%), Gaps = 1/136 (1%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||| |||| || || | ||| || || || | | ||| ||||| || || | ||| |
Sbjct 128084 CCTCGTCTCGGCTTATGAGTTCATTAGAGAAATTAA-TCCAGGCATAAGACCCCTCTTCT 128026
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||||||||| | ||||| ||||| || |||||||||||||| || ||||||||||
Sbjct 128025 TCAGCCAAAATATGGCAGCAAAGGATCCGGAGAAGAAGATTCCTTCCACAGCCGCAAAGG 127966
Query 42207 CAATAAGTCTCTCTCC 42222
||| | ||| || ||
Sbjct 127965 CAACCACTCTTTCCCC 127950
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 669460060057040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |