Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq152203 96.9 4e-15 >seq152203 Length=2432022 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| | || |||| || ||||| | |||||||| || || |||||||| || Sbjct 2337348 CCTCCCCTCAAGCGCAGGACCAAATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAT 2337407 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| | ||||| || || || || ||| |||||| | |||||||| || || Sbjct 2337408 AAGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCCGGGGGG 2337467 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| || || || | | || | ||||| |||| || ||| Sbjct 2337468 ATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACT 2337527 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | |||||||||||||| || || || || || |||||| Sbjct 2337528 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCATA 2337575 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| ||| || || | |||||||| || || || ||||| || | |||| | Sbjct 2337816 CGCAGAACCAAGTGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGATAAGGTGCGCCCA 2337875 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || || || || ||| |||||| | |||||||| || || |||||||||||| Sbjct 2337876 TCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCCGGGGGGATGCCTTCTTTG 2337935 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || || | | || | ||||| |||| || ||||| | || | Sbjct 2337936 TCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 2337995 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||||||||||||| || || || || || |||||| Sbjct 2337996 GTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCATA 2338031 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| ||| || || | |||||||| || || || ||||| || | |||| | Sbjct 2338044 CGCAGAACCAAGTGCAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAAGGTGCGCCCA 2338103 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || || || || ||| |||||| | |||||||| || || |||||||||||| Sbjct 2338104 TCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCCGGGGGGATGCCTTCTTTG 2338163 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || || | | || | ||||| |||| || ||||| | || | Sbjct 2338164 TCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 2338223 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||||||||||||| || || || || || |||||| Sbjct 2338224 GTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCATA 2338259 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || || || | || ||||| || || |||||||| || | |||| | Sbjct 2337588 CGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGATAAGGTGCGCCCA 2337647 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || || || || ||| |||||| | |||||||| || || |||||||||||| Sbjct 2337648 TCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCCGGGGGGATGCCTTCTTTG 2337707 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || || | | || | ||||| |||| || ||||| | || | Sbjct 2337708 TCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 2337767 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||||||||||||| || || || || || |||||| Sbjct 2337768 GTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCATA 2337803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505745887997280