Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06-
17] 200,154 sequences; 1,995,607,322 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq1 84.2 2e-11
>seq1
Length=47594283
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/89 (81%), Gaps = 4/89 (4%)
Strand=Plus/Plus
Query 13434 TCAATAAG----CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAA 13489
|||||||| || ||||| || ||||| ||||||||||| || ||||||||||||||
Sbjct 29604527 TCAATAAGAAGACTGTACATCTCCGAATGGATATTTTCCATAGCAATTTGGAAACCATAG 29604586
Query 13490 AAACATCTAGCCTCTGATACCTGAACTTC 13518
||||| | ||||||| || ||| |||||
Sbjct 29604587 AAACACCGCGCCTCTGTTATCTGTACTTC 29604615
Score = 82.4 bits (90), Expect = 7e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 12844 TGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCC 12903
|||||| || |||| | |||||||| | ||||| || |||||||| |||||||| ||
Sbjct 29600054 TGACATTACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCAAAAAAATTTGTTTTCCC 29600113
Query 12904 TTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT 12941
||| || || || ||||||||||| || || || ||||
Sbjct 29600114 TTCCAATGAGATGTTTTCCATAAAGTCAAATGGGTTTT 29600151
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429931071499908
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |