Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq152076 143 6e-29 seq152203 140 7e-28 seq171586 138 3e-27 seq152438 125 2e-23 seq152489 104 5e-17 >seq152076 Length=2538501 Score = 143 bits (158), Expect = 6e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || |||||| Sbjct 778990 ATGCCACCCCTCAGGCGTAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCA 779049 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| ||||| || || || || ||||| || |||||||| || |||||| Sbjct 779050 GAGAGTGTGCGACCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGA 779109 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || || || || || || | || || || || ||| Sbjct 779110 GGGATGCCTTCCTTGTCCTGGATTTTGGCCTTCACGTTCTCAATTGTGTCACTGGGCTCT 779169 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||| || || || || || ||||| |||||||||||| Sbjct 779170 ACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAAATCTGCATTTTG 779223 >seq152203 Length=2432022 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| ||||||||||| |||||||||| || | || ||||| || || ||||| Sbjct 2337834 GTAGATTCCTTCTGAATATTGTAGTCAGATAAGGTGCGCCCATCTTCCAGCTGCTTTCCG 2337893 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | ||||| ||||| || || || |||||||| ||||| ||||| || || Sbjct 2337894 GCAAAGATCAATCTCTGCTGATCCGGGGGGATGCCTTCTTTGTCCTGGATCTTGGCCTTG 2337953 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || || || || || || || ||||| || || | || Sbjct 2337954 ACGTTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAAGGTC 2338013 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 2338014 TTCACAAAGATCTGCAT 2338030 >seq171586 Length=8203 Score = 138 bits (152), Expect = 3e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || ||||| Sbjct 2653 ATGCCACCCCTCAGGCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCG 2712 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| ||||| || || || || ||||| || |||||||| || |||||| Sbjct 2713 GAGAGTGTGCGACCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGA 2772 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || || || || || || | || || || || ||| Sbjct 2773 GGGATGCCTTCCTTGTCCTGGATTTTGGCCTTCACGTTCTCAATTGTGTCACTGGGCTCT 2832 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||| || || || || || ||||| |||||||||||| Sbjct 2833 ACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAAATCTGCATTTTG 2886 >seq152438 Length=1158950 Score = 125 bits (138), Expect = 2e-23 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || ||||| | ||||| ||||| ||||| ||||| || ||||| || || || ||||| Sbjct 125021 GGGGAAAGAGTGGTTGCCTTTGCGGCTGTGGAAGGAATCTTCTTCTCCGGATCCTTTGCT 125080 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 || || |||||| ||||||| || || |||||||| ||||||||||||||||| ||| | Sbjct 125081 GCCATATTTTGGCTGAAGAAGAGGGGTCTTATGCCTGGATTAACTTTCTCTAATGAACTC 125140 Query 269246 ATAAGCAGGGACGA 269259 |||||| | ||||| Sbjct 125141 ATAAGCCGAGACGA 125154 >seq152489 Length=7015604 Score = 104 bits (114), Expect = 5e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | | ||||||||||| ||||| | || || ||||||||||||| || Sbjct 3176731 TGGTGGTACTTCGTGTCTAAAGGAATTGAATATTTCGACACGGTCTTCTTCATCCTGAGA 3176672 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| || || | ||| || ||||| || || || | || |||||||| ||| Sbjct 3176671 AAGAAAAACAACCAGGTCTCTTTCCTCCATGTGTACCACCACTGCACCATGTTTACATTG 3176612 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 | ||||| |||||||| ||| | ||||| ||||||| Sbjct 3176611 TGGTGGATTGGTATTAAGTGGGTGGCAGGGGGACAAG 3176575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1148445669747032