Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06-
17] 200,154 sequences; 1,995,607,322 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq153720 87.8 9e-13
seq190801 84.2 1e-11
seq155105 84.2 1e-11
seq177235 82.4 4e-11
seq174982 82.4 4e-11
seq164356 82.4 4e-11
seq156661 82.4 4e-11
seq155944 82.4 4e-11
seq152040 82.4 4e-11
>seq153720
Length=56299
Score = 87.8 bits (96), Expect = 9e-13
Identities = 75/93 (81%), Gaps = 3/93 (3%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497
||||||| ||||| |||||| | |||||||||| ||||||| ||||||||||
Sbjct 25520 AATAAAAGGACAAATGAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAG 25579
Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530
||| ||||||| |||||||||||||| |||||
Sbjct 25580 CACCACGCTCTAACCAACTGAGCTAACCGGCCG 25612
Score = 86.0 bits (94), Expect = 3e-12
Identities = 77/97 (79%), Gaps = 3/97 (3%)
Strand=Plus/Plus
Query 11437 AATTAATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493
||| || |||| | |||| |||||| | |||||||||| ||||||| ||||||
Sbjct 2898 AATAAAAGAAAATTAAAATGAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTA 2957
Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530
||||||| ||||||| |||||||||||||| |||||
Sbjct 2958 TTAGCACCACGCTCTAACCAACTGAGCTAACCGGCCG 2994
Score = 86.0 bits (94), Expect = 3e-12
Identities = 74/92 (80%), Gaps = 3/92 (3%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497
||||||| ||||| |||||| | |||||||||| ||||||| ||||||||||
Sbjct 27321 AATAAAAGGACAAATGAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAG 27380
Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||| ||||||| |||||||||||||| ||||
Sbjct 27381 CACCACGCTCTAACCAACTGAGCTAACCGGCC 27412
>seq190801
Length=4893
Score = 84.2 bits (92), Expect = 1e-11
Identities = 56/63 (89%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 619 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 678
Query 11528 CCG 11530
|||
Sbjct 679 CCG 681
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 3622 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 3681
Query 11528 CC 11529
||
Sbjct 3682 CC 3683
>seq155105
Length=34508
Score = 84.2 bits (92), Expect = 1e-11
Identities = 69/85 (81%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||||| | |||||| | |||||||||| ||||||| ||||||||||||| |||
Sbjct 7079 AAAAATCTAGCTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 7138
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| ||| |||||||||| ||||
Sbjct 7139 CTCTAACCGACTGAGCTAACCGGCC 7163
Score = 84.2 bits (92), Expect = 1e-11
Identities = 72/89 (81%), Gaps = 3/89 (3%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|||||||| || |||||| | |||||||||| ||||||| |||||||||||||
Sbjct 21177 AATAAAAACACA---TGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 21233
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| |||||||||||||| ||||
Sbjct 21234 CACGCTCTAACCAACTGAGCTAACCGGCC 21262
>seq177235
Length=11467
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 4286 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 4345
Query 11528 CC 11529
||
Sbjct 4346 CC 4347
>seq174982
Length=9353
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 8433 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 8374
Query 11528 CC 11529
||
Sbjct 8373 CC 8372
>seq164356
Length=10525
Score = 82.4 bits (90), Expect = 4e-11
Identities = 67/81 (83%), Gaps = 1/81 (1%)
Strand=Plus/Plus
Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502
|||||| ||| | ||||| | ||||||||||| ||||||| | ||||||||||| |
Sbjct 9326 TAAAAACTCAGCT-GGCCCGTATGGGGATCGAACCTGCGACCTTGGTGTTATTAGCACCA 9384
Query 11503 CGCTCTRACCAACTGAGCTAA 11523
|||||| ||||||||||||||
Sbjct 9385 CGCTCTAACCAACTGAGCTAA 9405
>seq156661
Length=27803
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 27311 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 27370
Query 11528 CC 11529
||
Sbjct 27371 CC 27372
>seq155944
Length=27047
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 7688 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 7747
Query 11528 CC 11529
||
Sbjct 7748 CC 7749
>seq152040
Length=3334495
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| | |||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 1437991 GGATCGAACCCTTGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1438050
Query 11528 CC 11529
||
Sbjct 1438051 CC 1438052
Lambda K H
0.639 0.410 0.921
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 260853324413704
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |