Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq153720 87.8 9e-13 seq190801 84.2 1e-11 seq155105 84.2 1e-11 seq177235 82.4 4e-11 seq174982 82.4 4e-11 seq164356 82.4 4e-11 seq156661 82.4 4e-11 seq155944 82.4 4e-11 seq152040 82.4 4e-11 >seq153720 Length=56299 Score = 87.8 bits (96), Expect = 9e-13 Identities = 75/93 (81%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||||||| ||||| |||||| | |||||||||| ||||||| |||||||||| Sbjct 25520 AATAAAAGGACAAATGAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAG 25579 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||| ||||||| |||||||||||||| ||||| Sbjct 25580 CACCACGCTCTAACCAACTGAGCTAACCGGCCG 25612 Score = 86.0 bits (94), Expect = 3e-12 Identities = 77/97 (79%), Gaps = 3/97 (3%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||| || |||| | |||| |||||| | |||||||||| ||||||| |||||| Sbjct 2898 AATAAAAGAAAATTAAAATGAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTA 2957 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||| ||||||| |||||||||||||| ||||| Sbjct 2958 TTAGCACCACGCTCTAACCAACTGAGCTAACCGGCCG 2994 Score = 86.0 bits (94), Expect = 3e-12 Identities = 74/92 (80%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||||||| ||||| |||||| | |||||||||| ||||||| |||||||||| Sbjct 27321 AATAAAAGGACAAATGAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAG 27380 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||| |||||||||||||| |||| Sbjct 27381 CACCACGCTCTAACCAACTGAGCTAACCGGCC 27412 >seq190801 Length=4893 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 619 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 678 Query 11528 CCG 11530 ||| Sbjct 679 CCG 681 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 3622 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 3681 Query 11528 CC 11529 || Sbjct 3682 CC 3683 >seq155105 Length=34508 Score = 84.2 bits (92), Expect = 1e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||||| | |||||| | |||||||||| ||||||| ||||||||||||| ||| Sbjct 7079 AAAAATCTAGCTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 7138 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||| |||||||||| |||| Sbjct 7139 CTCTAACCGACTGAGCTAACCGGCC 7163 Score = 84.2 bits (92), Expect = 1e-11 Identities = 72/89 (81%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| || |||||| | |||||||||| ||||||| ||||||||||||| Sbjct 21177 AATAAAAACACA---TGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 21233 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||| |||| Sbjct 21234 CACGCTCTAACCAACTGAGCTAACCGGCC 21262 >seq177235 Length=11467 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 4286 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 4345 Query 11528 CC 11529 || Sbjct 4346 CC 4347 >seq174982 Length=9353 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 8433 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 8374 Query 11528 CC 11529 || Sbjct 8373 CC 8372 >seq164356 Length=10525 Score = 82.4 bits (90), Expect = 4e-11 Identities = 67/81 (83%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| ||| | ||||| | ||||||||||| ||||||| | ||||||||||| | Sbjct 9326 TAAAAACTCAGCT-GGCCCGTATGGGGATCGAACCTGCGACCTTGGTGTTATTAGCACCA 9384 Query 11503 CGCTCTRACCAACTGAGCTAA 11523 |||||| |||||||||||||| Sbjct 9385 CGCTCTAACCAACTGAGCTAA 9405 >seq156661 Length=27803 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 27311 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 27370 Query 11528 CC 11529 || Sbjct 27371 CC 27372 >seq155944 Length=27047 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 7688 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 7747 Query 11528 CC 11529 || Sbjct 7748 CC 7749 >seq152040 Length=3334495 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| | |||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1437991 GGATCGAACCCTTGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1438050 Query 11528 CC 11529 || Sbjct 1438051 CC 1438052 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260853324413704